BMN: The pseudo-likelihood method for pairwise binary markov networks
Version 1.02

This package implements approximate and exact methods for pairwise binary markov models. The exact method uses an implementation of the junction tree algorithm for binary graphical models. For more details see the help files

AuthorHolger Hoefling
Date of publication2010-04-25 16:00:14
MaintainerHolger Hoefling <hhoeflin@gmail.com>
LicenseGPL-2
Version1.02
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("BMN")

Popular man pages

BMNExamples: Sampling data using Gibbs sampling for use in the examples
BMNJT: Junction tree algorithm for pairwise binary Markov networks
BMNPseudo: Pseudo-likelihood inference in L1-penalized Binary Markov...
BMNExact: Exact inference in L1-penalized Binary Markov Model
See all...

All man pages Function index File listing

Man pages

BMNExact: Exact inference in L1-penalized Binary Markov Model
BMNExamples: Sampling data using Gibbs sampling for use in the examples
BMNJT: Junction tree algorithm for pairwise binary Markov networks
BMNPseudo: Pseudo-likelihood inference in L1-penalized Binary Markov...

Functions

BMNExact Man page Source code
BMNExact.single Man page Source code
BMNGradientPen Source code
BMNJT Man page Source code
BMNJTlogPartFunc Source code
BMNL1Loss Source code
BMNLogLik Source code
BMNPseudo Man page Source code
BMNPseudo.single Man page Source code
BMNSamples Man page Source code
BMNcalcDelta Source code
BMNcalcEtas Source code
BMNcalcSingleEta Source code
BMNcheckRho Source code
BMNcheckSubGrad Source code
BMNgetNextTheta Source code
BMNgetRestricedRhoMatrix Source code
BMNlineSearch Source code
BMNmakeSymmetric Source code
GibbsIteration Source code
gibbsSecMoment Source code
nextSample Source code

Files

R
R/BMNExact.R
R/BMNPseudo.R
R/SynDataGibbs.R
R/BMNJT.R
src
src/pseudoLikelihood.cc
src/Makevars.old
src/ProbGraph.cc
src/JTAlgWrapper.cc
src/pseudoLikelihood.h
src/Potential.cc
src/Potential.h
src/ProbGraph.h
src/Makevars.win
src/JunctionTree.h
src/JunctionTree.cc
src/Makevars
man
man/BMNExact.Rd
man/BMNExamples.Rd
man/BMNPseudo.Rd
man/BMNJT.Rd
DESCRIPTION
NAMESPACE
BMN documentation built on May 19, 2017, 8:03 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.