R/foxp2.R

In BMRMM: An Implementation of the Bayesian Markov (Renewal) Mixed Models

#' Simulated FoxP2 Data Set.
#'
#' A simulated data set of the original FoxP2 data set, which contains
#' the sequences of syllables sung by male mice of
#' different genotypes under various social contexts.
#'
#' @format A data frame with 17391 rows and 6 variables:
#' \describe{
#'   \item{Id}{Mouse Id}
#'   \item{Genotype}{Genotype of the mouse, 1 = FoxP2 knocked out, 2 = wild type}
#'   \item{Context}{Social context for the mouse, 1 = U (urine sample placed in the cage), 2 = L (living female mouse placed in the cage), 3 = A (an anesthetized female placed on the lid of the cage)}
#'   \item{Prev_State}{The previous syllable, \{1,2,3,4\} = \{d,m,s,u\}}
#'   \item{Cur_State}{The current syllable, \{1,2,3,4\} = \{d,m,s,u\}}
#'   \item{Transformed_ISI}{Modified inter-syllable interval times, log(original ISI + 1)}
#' }
#' 
#' @references
#' Chabout, J., Sarkar, A., Patel, S. R., Radden, T., Dunson, D. B., Fisher, S. E., & Jarvis, E. D. (2016). A Foxp2 mutation implicated in human speech deficits alters sequencing of ultrasonic vocalizations in adult male mice. Frontiers in behavioral neuroscience, 10, 197. \cr
#' 
#' Wu, Y., Jarvis E. D., & Sarkar, A. (2023). Bayesian semiparametric Markov renewal mixed models for vocalization syntax. Biostatistics, To appear.
#' 
"foxp2"