NEWS.md

In BMTME: Bayesian Multi-Trait Multi-Environment for Genomic Selection Analysis

BMTME v1.0.19

Changes:

• [FIX] Rcpp bug to run test

BMTME v1.0.17

Changes:

• [FIX] Rcpp bug to run test
• [FIX] test of the package
• [IMP] Random partition Environment and Traits now are exported as character, not as factor.

BMTME v1.0.12

Changes:

• [FIX] Users can overwrite the package compiler.

BMTME v1.0.11

Changes:

• [FIX] Users can overwrite the package compiler.

BMTME v1.0.10

Changes:

• [FIX] clang: warnings
• [FIX] Deprecated funs from dplyr

BMTME v1.0.6

Changes:

• [Fix bug] Fixed eigen values in BME and BMTME functions.

BMTME v1.0.5

Changes:

• [Update] Fixed package to keep it compatible with new version of dplyr.
• [Update] New parameter tolerance in cholesky function.

BMTME v1.0.4 [First CRAN release]

Changes:

• [Update] Examples provided to BMORS, BME, BMTME and BMORS_Env functions.
• [Update] Description of the package.

BMTME v1.0.3

Changes:

• [Update] New tests was added.
• [refactoring code] Update validation of cores to use only the 50% of the available cores.
• [refactoring code] Change to snow and doSNOW packages to parallel work.
• [refactoring code] Bug fixed.

BMTME v1.0.2

Changes:

• [Update] New tests was added.
• [refactoring code] Now the progress bar with parallel work it is with pbapply package
• [refactoring code] Change snow and doSNOW packages to parallel package
• [refactoring code] New function to crossvalidation, easier to maintain.
• [Update] Add a good description.

BMTME v1.0.1

Changes:

• [Fixed] Makevars.win to compile C++ code.
• [refactoring code] cholesky function.

BMTME v1.0.0

Changes: * Fixed typo * Include vignettes * Removed unused code

BMTME v0.0.26

Changes: * Improvements in tests * Minor fixes

BMTME v0.0.25

Changes:

• Include coverage test
• Typo fixed
• Fixed bug in BMTME() function with a vector as testingSet parameter.
• Fixed bug in RandomPartition() function.
• Implemented predictions with not crossvalidation in BMORS() function.
• Include print() function to BMORS object with not crossvalidation.

BMTME v0.0.24

Changes:

• Removed stratified random partitions.
• Fixed barplot for BMORS_Env.
• Good practice with <-
• complete F or T, logical arguments.
• Bug fixed: changed 1:length to seq_len to avoid bugs.
• Include ORCID.

BMTME v0.0.23

Changes:

• Include more tests.
• Fixed print message of BMORS() and BMORS_Env() functions.
• Fixed parallel work of BMORS() function.

BMTME v0.0.22

Changes:

• Important updates to the documentation.
• Fixed MAC-OS 10.11 El Capitan, installation (issue #1).

BMTME v0.0.21

Changes:

• BMTERS() function now is BMORS() function.
• BMTERS_Env() function now is BMORS_Env() function.

BMTME v0.0.20

Changes:

• Update Windows c++ support.
• Fixed issues #1 (Installation in Windows) and #2 (Typos). Thanks to @volpatoo and @j450h1 by reporting it.

BMTME v0.0.19

Changes:

• Update plot and boxplot functions

BMTME v0.0.18

Changes:

• New predictor_Sec_complete parameter in BMTMERS_Env() function.

BMTME v0.0.17

Changes:

• New predictor_Sec_complete parameter in BMTMERS() function.

BMTME v0.0.16

Changes:

• The MSEP was changed to MAAPE for the error estimations of the predictions.
• Minor fixes in the documentation.
• Now the boxplots can be ordered by the MAAPE.
• fixed the predicted output.

BMTME v0.0.15

Changes:

• Implement parallel mode in the BMTMERS function
• Implement validation to parallelCores parameter in the functions that could use it.
• export n_cores used to fit the models that could use parallelCores parameter.
• fixed class of BME function.

BMTME v0.0.14

Changes:

• Update Unix support

BMTME v0.0.13

Changes:

• Initial development is in progress, but there has not yet been a stable, usable release suitable for the public; this is a pre-release, be careful.

BMTME v0.0.1

Changes:

• Initial commit

BMTME documentation built on Aug. 27, 2020, 1:08 a.m.