BSagri: Statistical methods for safety assessment in agricultural field trials
Version 0.1-8

Collection of functions, data sets and code examples for evaluations of field trials with the objective of equivalence assessment.

Browse man pages Browse package API and functions Browse package files

AuthorFrank Schaarschmidt
Date of publication2013-11-21 11:50:03
MaintainerFrank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
LicenseGPL-2
Version0.1-8
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("BSagri")

Man pages

allignment: Allignment according to one factor
BOOTSimpson: Simultaneous confidence intervals for Simpson indices
Brachycera: Eklektor counts of Brachycera
c2compnames: Define row names of a contrast matrix, depending on its...
CCDiff: Contrasts of parameters simulated in BUGS
CCDiff.boot: Compute contrasts of chains of joint empirical distributions.
CCDiff.default: Compute contrasts of chains of joint empirical distributions.
CCRatio: Ratio - contrasts of parameters simulated in BUGS
CCRatio.boot: Compute ratio contrasts of chains of joint empirical...
CCRatio.default: Compute ratio contrasts of chains of joint empirical...
checkargssim: For internal use.
Cica1: Catches of Planthoppers and Leafhoppers
Cica2: Catches of Planthoppers and Leafhoppers
CIGLM: Wrapper to compute confidence intervals from glms
CInp: Construct local confidence intervals from joint empirical...
CountRep: Simulated count data incl. repeated measurements
Decomp: A simulated data set
Diptera: Soil eklektor data for some families of Diptera
ExNBCov: Simulated example data, drawn from a Negative Binomial...
ExPCov: Simulated example data following a Poisson distribution
fakeln: A simulated data set of lognormal data
Feeding: Pupation and Hatching rate in a feeding experiment with four...
IAcontrasts: Interaction contrasts for 2-factorial designs
IAcontrastsCMAT: Interaction contrasts for a two-factorial design
Lepi: Insect counts of 12 Species
minus2slash: Replace - by / in character strings
MM1: Simulated data set for a simple mixed model
MMPois: Simulated data for a simple mixed model with Poisson response
MMPoisRep: Simulated data for a simple mixed model with Poisson response
modelparm.methods: For internal use. Extract model parameters needed for...
Nematocera: Trap counts of Nematocera
plotCI.Methods: Plot confidence intervals calculated by pairwiseCI
printfunctions: Print function for SCSnp
R2Bugsdat1w: For internal use
R2Bugsdat1w.data.frame: For internal use.
SCSnp: Simultaneous confidence sets from empirical joint...
simplesimint: Simultaneous confidence intervals from raw estimates
summary.simplesimint: Detailed print out for simplesimint objects
UnlogCI: Transform confidence intervals from glm fits.
vcov.gamlss: Extract variance covariance matrix from objects of class...
vcov.geeglm: Extract variance covariance matrix from objects of class...

Functions

BOOTSimpsonD Man page
BOOTSimpsonR Man page
Brachycera Man page
CCDiff Man page
CCDiff.boot Man page
CCDiff.default Man page
CCRatio Man page
CCRatio.boot Man page
CCRatio.default Man page
CIGLM Man page Source code
CInp Man page
CInp.CCDiff Man page
CInp.CCRatio Man page
CInp.bugs Man page
CInp.default Man page
Cica1 Man page
Cica2 Man page
CountRep Man page
Decomp Man page
Diptera Man page
ExNBCov Man page
ExPCov Man page
Feeding Man page
IAcontrasts Man page Source code
IAcontrastsCMAT Man page Source code
Lepi Man page
MM1 Man page
MMPois Man page
MMPoisRep Man page
Nematocera Man page
R2Bugsdat1w Man page
R2Bugsdat1w.data.frame Man page
SCSnp Man page
SCSnp.CCDiff Man page
SCSnp.CCRatio Man page
SCSnp.bugs Man page
SCSnp.default Man page
UnlogCI Man page Source code
UnlogCI.glht Man page Source code
allignment Man page
c2compnames Man page Source code
checkargssim Man page Source code
fakeln Man page
minus2slash Man page Source code
modelparm.gamlss Man page
modelparm.geeglm Man page
plotCI.UnlogCI Man page Source code
plotCI.simplesimint Man page Source code
print.CInp Man page
print.SCSnp Man page
print.UnlogCI Man page Source code
print.simplesimint Man page Source code
simplesimint Man page Source code
summary.simplesimint Man page Source code
vcov.gamlss Man page
vcov.geeglm Man page

Files

NAMESPACE
data
data/Feeding.rda
data/Diptera.rda
data/CountRep.rda
data/MM1.rda
data/ExPCov.rda
data/Lepi.rda
data/Decomp.rda
data/fakeln.rda
data/Cica1.rda
data/MMPois.rda
data/ExNBCov.rda
data/Cica2.rda
data/MMPoisRep.rda
data/Nematocera.rda
data/Brachycera.rda
R
R/CIglm.R
R/print.SCSnp.R
R/plotCI.UnlogCI.R
R/R2Bugsdat1w.R
R/IAcontrasts.R
R/SCSnp.R
R/CCRatio.R
R/allignment.R
R/R2Bugsdat1w.data.frame.R
R/simplesimint.R
R/BOOTSimpsonD.R
R/BOOTSimpsonR.R
R/CCDiff.R
R/gamlss_glht.R
R/geeglm_glht.R
R/CInp.R
R/print.CInp.R
MD5
DESCRIPTION
man
man/vcov.gamlss.Rd
man/CCRatio.Rd
man/allignment.Rd
man/modelparm.methods.Rd
man/simplesimint.Rd
man/checkargssim.Rd
man/Feeding.Rd
man/CountRep.Rd
man/R2Bugsdat1w.Rd
man/Lepi.Rd
man/SCSnp.Rd
man/c2compnames.Rd
man/minus2slash.Rd
man/CCDiff.boot.Rd
man/ExPCov.Rd
man/MMPoisRep.Rd
man/Diptera.Rd
man/CCDiff.Rd
man/IAcontrasts.Rd
man/fakeln.Rd
man/BOOTSimpson.Rd
man/Brachycera.Rd
man/MM1.Rd
man/Cica1.Rd
man/Cica2.Rd
man/IAcontrastsCMAT.Rd
man/CIGLM.Rd
man/UnlogCI.Rd
man/CCRatio.default.Rd
man/vcov.geeglm.Rd
man/CCRatio.boot.Rd
man/Decomp.Rd
man/summary.simplesimint.Rd
man/CCDiff.default.Rd
man/plotCI.Methods.Rd
man/ExNBCov.Rd
man/R2Bugsdat1w.data.frame.Rd
man/MMPois.Rd
man/Nematocera.Rd
man/CInp.Rd
man/printfunctions.Rd
BSagri documentation built on May 19, 2017, 9:19 p.m.