BSagri: Statistical methods for safety assessment in agricultural field trials

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Collection of functions, data sets and code examples for evaluations of field trials with the objective of equivalence assessment.

Author
Frank Schaarschmidt
Date of publication
2013-11-21 11:50:03
Maintainer
Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
License
GPL-2
Version
0.1-8

View on CRAN

Man pages

allignment
Allignment according to one factor
BOOTSimpson
Simultaneous confidence intervals for Simpson indices
Brachycera
Eklektor counts of Brachycera
c2compnames
Define row names of a contrast matrix, depending on its...
CCDiff
Contrasts of parameters simulated in BUGS
CCDiff.boot
Compute contrasts of chains of joint empirical distributions.
CCDiff.default
Compute contrasts of chains of joint empirical distributions.
CCRatio
Ratio - contrasts of parameters simulated in BUGS
CCRatio.boot
Compute ratio contrasts of chains of joint empirical...
CCRatio.default
Compute ratio contrasts of chains of joint empirical...
checkargssim
For internal use.
Cica1
Catches of Planthoppers and Leafhoppers
Cica2
Catches of Planthoppers and Leafhoppers
CIGLM
Wrapper to compute confidence intervals from glms
CInp
Construct local confidence intervals from joint empirical...
CountRep
Simulated count data incl. repeated measurements
Decomp
A simulated data set
Diptera
Soil eklektor data for some families of Diptera
ExNBCov
Simulated example data, drawn from a Negative Binomial...
ExPCov
Simulated example data following a Poisson distribution
fakeln
A simulated data set of lognormal data
Feeding
Pupation and Hatching rate in a feeding experiment with four...
IAcontrasts
Interaction contrasts for 2-factorial designs
IAcontrastsCMAT
Interaction contrasts for a two-factorial design
Lepi
Insect counts of 12 Species
minus2slash
Replace - by / in character strings
MM1
Simulated data set for a simple mixed model
MMPois
Simulated data for a simple mixed model with Poisson response
MMPoisRep
Simulated data for a simple mixed model with Poisson response
modelparm.methods
For internal use. Extract model parameters needed for...
Nematocera
Trap counts of Nematocera
plotCI.Methods
Plot confidence intervals calculated by pairwiseCI
printfunctions
Print function for SCSnp
R2Bugsdat1w
For internal use
R2Bugsdat1w.data.frame
For internal use.
SCSnp
Simultaneous confidence sets from empirical joint...
simplesimint
Simultaneous confidence intervals from raw estimates
summary.simplesimint
Detailed print out for simplesimint objects
UnlogCI
Transform confidence intervals from glm fits.
vcov.gamlss
Extract variance covariance matrix from objects of class...
vcov.geeglm
Extract variance covariance matrix from objects of class...

Files in this package

BSagri
BSagri/NAMESPACE
BSagri/data
BSagri/data/Feeding.rda
BSagri/data/Diptera.rda
BSagri/data/CountRep.rda
BSagri/data/MM1.rda
BSagri/data/ExPCov.rda
BSagri/data/Lepi.rda
BSagri/data/Decomp.rda
BSagri/data/fakeln.rda
BSagri/data/Cica1.rda
BSagri/data/MMPois.rda
BSagri/data/ExNBCov.rda
BSagri/data/Cica2.rda
BSagri/data/MMPoisRep.rda
BSagri/data/Nematocera.rda
BSagri/data/Brachycera.rda
BSagri/R
BSagri/R/CIglm.R
BSagri/R/print.SCSnp.R
BSagri/R/plotCI.UnlogCI.R
BSagri/R/R2Bugsdat1w.R
BSagri/R/IAcontrasts.R
BSagri/R/SCSnp.R
BSagri/R/CCRatio.R
BSagri/R/allignment.R
BSagri/R/R2Bugsdat1w.data.frame.R
BSagri/R/simplesimint.R
BSagri/R/BOOTSimpsonD.R
BSagri/R/BOOTSimpsonR.R
BSagri/R/CCDiff.R
BSagri/R/gamlss_glht.R
BSagri/R/geeglm_glht.R
BSagri/R/CInp.R
BSagri/R/print.CInp.R
BSagri/MD5
BSagri/DESCRIPTION
BSagri/man
BSagri/man/vcov.gamlss.Rd
BSagri/man/CCRatio.Rd
BSagri/man/allignment.Rd
BSagri/man/modelparm.methods.Rd
BSagri/man/simplesimint.Rd
BSagri/man/checkargssim.Rd
BSagri/man/Feeding.Rd
BSagri/man/CountRep.Rd
BSagri/man/R2Bugsdat1w.Rd
BSagri/man/Lepi.Rd
BSagri/man/SCSnp.Rd
BSagri/man/c2compnames.Rd
BSagri/man/minus2slash.Rd
BSagri/man/CCDiff.boot.Rd
BSagri/man/ExPCov.Rd
BSagri/man/MMPoisRep.Rd
BSagri/man/Diptera.Rd
BSagri/man/CCDiff.Rd
BSagri/man/IAcontrasts.Rd
BSagri/man/fakeln.Rd
BSagri/man/BOOTSimpson.Rd
BSagri/man/Brachycera.Rd
BSagri/man/MM1.Rd
BSagri/man/Cica1.Rd
BSagri/man/Cica2.Rd
BSagri/man/IAcontrastsCMAT.Rd
BSagri/man/CIGLM.Rd
BSagri/man/UnlogCI.Rd
BSagri/man/CCRatio.default.Rd
BSagri/man/vcov.geeglm.Rd
BSagri/man/CCRatio.boot.Rd
BSagri/man/Decomp.Rd
BSagri/man/summary.simplesimint.Rd
BSagri/man/CCDiff.default.Rd
BSagri/man/plotCI.Methods.Rd
BSagri/man/ExNBCov.Rd
BSagri/man/R2Bugsdat1w.data.frame.Rd
BSagri/man/MMPois.Rd
BSagri/man/Nematocera.Rd
BSagri/man/CInp.Rd
BSagri/man/printfunctions.Rd