BSagri: Statistical methods for safety assessment in agricultural field trials

Collection of functions, data sets and code examples for evaluations of field trials with the objective of equivalence assessment.

AuthorFrank Schaarschmidt
Date of publication2013-11-21 11:50:03
MaintainerFrank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
LicenseGPL-2
Version0.1-8

View on CRAN

Man pages

allignment: Allignment according to one factor

BOOTSimpson: Simultaneous confidence intervals for Simpson indices

Brachycera: Eklektor counts of Brachycera

c2compnames: Define row names of a contrast matrix, depending on its...

CCDiff: Contrasts of parameters simulated in BUGS

CCDiff.boot: Compute contrasts of chains of joint empirical distributions.

CCDiff.default: Compute contrasts of chains of joint empirical distributions.

CCRatio: Ratio - contrasts of parameters simulated in BUGS

CCRatio.boot: Compute ratio contrasts of chains of joint empirical...

CCRatio.default: Compute ratio contrasts of chains of joint empirical...

checkargssim: For internal use.

Cica1: Catches of Planthoppers and Leafhoppers

Cica2: Catches of Planthoppers and Leafhoppers

CIGLM: Wrapper to compute confidence intervals from glms

CInp: Construct local confidence intervals from joint empirical...

CountRep: Simulated count data incl. repeated measurements

Decomp: A simulated data set

Diptera: Soil eklektor data for some families of Diptera

ExNBCov: Simulated example data, drawn from a Negative Binomial...

ExPCov: Simulated example data following a Poisson distribution

fakeln: A simulated data set of lognormal data

Feeding: Pupation and Hatching rate in a feeding experiment with four...

IAcontrasts: Interaction contrasts for 2-factorial designs

IAcontrastsCMAT: Interaction contrasts for a two-factorial design

Lepi: Insect counts of 12 Species

minus2slash: Replace - by / in character strings

MM1: Simulated data set for a simple mixed model

MMPois: Simulated data for a simple mixed model with Poisson response

MMPoisRep: Simulated data for a simple mixed model with Poisson response

modelparm.methods: For internal use. Extract model parameters needed for...

Nematocera: Trap counts of Nematocera

plotCI.Methods: Plot confidence intervals calculated by pairwiseCI

printfunctions: Print function for SCSnp

R2Bugsdat1w: For internal use

R2Bugsdat1w.data.frame: For internal use.

SCSnp: Simultaneous confidence sets from empirical joint...

simplesimint: Simultaneous confidence intervals from raw estimates

summary.simplesimint: Detailed print out for simplesimint objects

UnlogCI: Transform confidence intervals from glm fits.

vcov.gamlss: Extract variance covariance matrix from objects of class...

vcov.geeglm: Extract variance covariance matrix from objects of class...

Files in this package

BSagri
BSagri/NAMESPACE
BSagri/data
BSagri/data/Feeding.rda
BSagri/data/Diptera.rda
BSagri/data/CountRep.rda
BSagri/data/MM1.rda
BSagri/data/ExPCov.rda
BSagri/data/Lepi.rda
BSagri/data/Decomp.rda
BSagri/data/fakeln.rda
BSagri/data/Cica1.rda
BSagri/data/MMPois.rda
BSagri/data/ExNBCov.rda
BSagri/data/Cica2.rda
BSagri/data/MMPoisRep.rda
BSagri/data/Nematocera.rda
BSagri/data/Brachycera.rda
BSagri/R
BSagri/R/CIglm.R BSagri/R/print.SCSnp.R BSagri/R/plotCI.UnlogCI.R BSagri/R/R2Bugsdat1w.R BSagri/R/IAcontrasts.R BSagri/R/SCSnp.R BSagri/R/CCRatio.R BSagri/R/allignment.R BSagri/R/R2Bugsdat1w.data.frame.R BSagri/R/simplesimint.R BSagri/R/BOOTSimpsonD.R BSagri/R/BOOTSimpsonR.R BSagri/R/CCDiff.R BSagri/R/gamlss_glht.R BSagri/R/geeglm_glht.R BSagri/R/CInp.R BSagri/R/print.CInp.R
BSagri/MD5
BSagri/DESCRIPTION
BSagri/man
BSagri/man/vcov.gamlss.Rd BSagri/man/CCRatio.Rd BSagri/man/allignment.Rd BSagri/man/modelparm.methods.Rd BSagri/man/simplesimint.Rd BSagri/man/checkargssim.Rd BSagri/man/Feeding.Rd BSagri/man/CountRep.Rd BSagri/man/R2Bugsdat1w.Rd BSagri/man/Lepi.Rd BSagri/man/SCSnp.Rd BSagri/man/c2compnames.Rd BSagri/man/minus2slash.Rd BSagri/man/CCDiff.boot.Rd BSagri/man/ExPCov.Rd BSagri/man/MMPoisRep.Rd BSagri/man/Diptera.Rd BSagri/man/CCDiff.Rd BSagri/man/IAcontrasts.Rd BSagri/man/fakeln.Rd BSagri/man/BOOTSimpson.Rd BSagri/man/Brachycera.Rd BSagri/man/MM1.Rd BSagri/man/Cica1.Rd BSagri/man/Cica2.Rd BSagri/man/IAcontrastsCMAT.Rd BSagri/man/CIGLM.Rd BSagri/man/UnlogCI.Rd BSagri/man/CCRatio.default.Rd BSagri/man/vcov.geeglm.Rd BSagri/man/CCRatio.boot.Rd BSagri/man/Decomp.Rd BSagri/man/summary.simplesimint.Rd BSagri/man/CCDiff.default.Rd BSagri/man/plotCI.Methods.Rd BSagri/man/ExNBCov.Rd BSagri/man/R2Bugsdat1w.data.frame.Rd BSagri/man/MMPois.Rd BSagri/man/Nematocera.Rd BSagri/man/CInp.Rd BSagri/man/printfunctions.Rd

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