BTSPAS: Bayesian Time-Strat. Population Analysis

BTSPAS provides advanced Bayesian methods to estimate abundance and run-timing from temporally-stratified Petersen mark-recapture experiments. Methods include hierarchical modelling of the capture probabilities and spline smoothing of the daily run size. This version uses JAGS to sample from the posterior distribution.

Install the latest version of this package by entering the following in R:
install.packages("BTSPAS")
AuthorCarl J Schwarz <cschwarz@stat.sfu.ca> and Simon J Bonner <simon.bonner@uky.edu>
Date of publication2014-08-26 07:51:36
MaintainerCarl J Schwarz <cschwarz@stat.sfu.ca>
LicenseGPL (>= 2)
Version2014.0901
http://www.stat.sfu.ca/~cschwarz/Consulting/Trinity/Phase2

View on CRAN

Functions

BTSPAS Man page
BTSPAS-internal Man page
BTSPAS-package Man page
expit Man page
genInitsTTln Man page
genInitsTTnp Man page
genInitVals Man page
genInitValsChain Man page
lnTheta Man page
logit Man page
make.muTT.prior Man page
plot_logitP Man page
PredictivePosteriorPlot.TSPDE Man page
PredictivePosteriorPlot.TSPDE.WHCH Man page
PredictivePosteriorPlot.TSPDE.WHCH2 Man page
PredictivePosteriorPlot.TSPDE.WHSteel Man page
PredictivePosteriorPlot.TSPNDE Man page
PredictivePosterior.TSPDE Man page
PredictivePosterior.TSPDE.WHCH Man page
PredictivePosterior.TSPDE.WHCH2 Man page
PredictivePosterior.TSPDE.WHSteel Man page
PredictivePosterior.TSPNDE Man page
PredictivePosterior.TSPNDENP Man page
run.jags Man page
run.MCMC Man page
run.openbugs Man page
RunTime Man page
SimplePetersen Man page
simTSPNDE Man page
TestIfPool Man page
TimeStratPetersenDiagError Man page
TimeStratPetersenDiagError_fit Man page
TimeStratPetersenDiagErrorWHChinook Man page
TimeStratPetersenDiagErrorWHChinook2 Man page
TimeStratPetersenDiagErrorWHChinook2_fit Man page
TimeStratPetersenDiagErrorWHChinook_fit Man page
TimeStratPetersenNonDiagError Man page
TimeStratPetersenNonDiagError_fit Man page
TimeStratPetersenNonDiagErrorNP Man page
TimeStratPetersenNonDiagErrorNP_fit Man page
TimeStratPetersenNonDiagErrorNPMarkAvail Man page
TimeStratPetersenNonDiagErrorNPMarkAvail_fit Man page
TimeToTargetRunSize Man page
trace_plot Man page
visualize.muTT.prior Man page
zzz Man page

Files

inst
inst/CITATION
inst/NEWS.Rd
NAMESPACE
demo
demo/demo-TSPDE-WHsteel.r demo/demo-TSPNDENP-error.r demo/demo-TSPDE.r demo/demo-TSPDE-WHchinook.r demo/demo-TSPNDE.r demo/demo-TSPDE-spline-in-logitP.r demo/demo-TSPDE-WHchinook2.r demo/demo-TSPNDENP-small.r demo/demo-TSPNDENP-small-prior-movement.r
demo/00Index
demo/demo-TSPNDE-conne-2009.r demo/demo-TSPNDENP-conne-2009-prior-movement.r demo/demo-TSPDE-cov.r demo/demo-TSPNDENP-conne-2009.r demo/demo-TSPNDENP-fall-back.r demo/demo-TSPDE-error.r
R
R/PredictivePosteriorPlot_TSPDE_WHChinook2.r R/TimeStratPetersenNonDiagError.R R/TimeStratPetersenNonDiagErrorNP.R R/initial_values.R R/TimeStratPetersenNonDiagError_fit.R R/logit.R R/TimeStratPetersenDiagErrorWHChinook_fit.R R/prior.muTT.functions.R R/PredictivePosterior_TSPDE_WHChinook.R R/PredictivePosterior_TSPNDENP.R R/plot_logit.R R/PredictivePosterior_TSPNDE.R R/TimeStratPetersenDiagErrorWHChinook2_fit.R R/TimeStratPetersenDiagErrorWHSteel_fit.R R/PredictivePosterior_TSPDE_WHSteel.R R/run_MCMC.r R/TimeStratPetersenNonDiagErrorNP_fit.R R/TimeStratPetersenDiagError.R R/SimplePetersen.R R/TimeStratPetersenDiagErrorWHChinook2.R R/run_jags.R R/TimeStratPetersenDiagErrorWHSteel.R R/TimeStratPetersenDiagErrorWHChinook.R R/PredictivePosterior_TSPDE.R R/PredictivePosteriorPlot_TSPDE_WHSteel.R R/run_openbugs.R R/TimeStratPetersenNonDiagErrorNPMarkAvail_fit.R R/RunTime.R R/trace_plot.R R/PredictivePosterior_TSPDE_WHChinook2.r R/TimeStratPetersenDiagError_fit.R R/PredictivePosteriorPlot_TSPDE_WHChinook.R R/TimeToTargetRunSize.r R/PredictivePosteriorPlot_TSPNDE.R R/TimeStratPetersenNonDiagErrorNPMarkAvail.R R/PredictivePosteriorPlot_TSPDE.R R/zzz.R
MD5
README
DESCRIPTION
man
man/BTSPAS-package.Rd man/TimeStratPetersenDiagErrorWHChinook_fit.Rd man/TimeToTargetRunSize.Rd man/logit.Rd man/trace_plot.Rd man/BTSPAS-internal.Rd
man/TimeStratPetersenDiagErrorWHSteel.rd
man/TimeStratPetersenNonDiagError_fit.Rd man/TimeStratPetersenDiagError_fit.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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