BTSPAS: Bayesian Time-Strat. Population Analysis

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BTSPAS provides advanced Bayesian methods to estimate abundance and run-timing from temporally-stratified Petersen mark-recapture experiments. Methods include hierarchical modelling of the capture probabilities and spline smoothing of the daily run size. This version uses JAGS to sample from the posterior distribution.

Author
Carl J Schwarz <cschwarz@stat.sfu.ca> and Simon J Bonner <simon.bonner@uky.edu>
Date of publication
2014-08-26 07:51:36
Maintainer
Carl J Schwarz <cschwarz@stat.sfu.ca>
License
GPL (>= 2)
Version
2014.0901
URLs

View on CRAN

Man pages

BTSPAS-internal
Internal functions not normally called by the user
BTSPAS-package
Bayesian Time-Stratified Population Analysis
logit
Logit and anti-logit function.
TimeStratPetersenDiagError_fit
Wrapper (*_fit) and function to call the Time Statified...
TimeStratPetersenDiagErrorWHChinook_fit
Wrapper (*_fit) and function to call the Time Statified...
TimeStratPetersenNonDiagError_fit
Wrapper (*_fit) and function to call the Time Statified...
TimeToTargetRunSize
Computes and plots posterior distribution of time to get...
trace_plot
Creates trace plots of specified parameters showing the...

Files in this package

BTSPAS
BTSPAS/inst
BTSPAS/inst/CITATION
BTSPAS/inst/NEWS.Rd
BTSPAS/NAMESPACE
BTSPAS/demo
BTSPAS/demo/demo-TSPDE-WHsteel.r
BTSPAS/demo/demo-TSPNDENP-error.r
BTSPAS/demo/demo-TSPDE.r
BTSPAS/demo/demo-TSPDE-WHchinook.r
BTSPAS/demo/demo-TSPNDE.r
BTSPAS/demo/demo-TSPDE-spline-in-logitP.r
BTSPAS/demo/demo-TSPDE-WHchinook2.r
BTSPAS/demo/demo-TSPNDENP-small.r
BTSPAS/demo/demo-TSPNDENP-small-prior-movement.r
BTSPAS/demo/00Index
BTSPAS/demo/demo-TSPNDE-conne-2009.r
BTSPAS/demo/demo-TSPNDENP-conne-2009-prior-movement.r
BTSPAS/demo/demo-TSPDE-cov.r
BTSPAS/demo/demo-TSPNDENP-conne-2009.r
BTSPAS/demo/demo-TSPNDENP-fall-back.r
BTSPAS/demo/demo-TSPDE-error.r
BTSPAS/R
BTSPAS/R/PredictivePosteriorPlot_TSPDE_WHChinook2.r
BTSPAS/R/TimeStratPetersenNonDiagError.R
BTSPAS/R/TimeStratPetersenNonDiagErrorNP.R
BTSPAS/R/initial_values.R
BTSPAS/R/TimeStratPetersenNonDiagError_fit.R
BTSPAS/R/logit.R
BTSPAS/R/TimeStratPetersenDiagErrorWHChinook_fit.R
BTSPAS/R/prior.muTT.functions.R
BTSPAS/R/PredictivePosterior_TSPDE_WHChinook.R
BTSPAS/R/PredictivePosterior_TSPNDENP.R
BTSPAS/R/plot_logit.R
BTSPAS/R/PredictivePosterior_TSPNDE.R
BTSPAS/R/TimeStratPetersenDiagErrorWHChinook2_fit.R
BTSPAS/R/TimeStratPetersenDiagErrorWHSteel_fit.R
BTSPAS/R/PredictivePosterior_TSPDE_WHSteel.R
BTSPAS/R/run_MCMC.r
BTSPAS/R/TimeStratPetersenNonDiagErrorNP_fit.R
BTSPAS/R/TimeStratPetersenDiagError.R
BTSPAS/R/SimplePetersen.R
BTSPAS/R/TimeStratPetersenDiagErrorWHChinook2.R
BTSPAS/R/run_jags.R
BTSPAS/R/TimeStratPetersenDiagErrorWHSteel.R
BTSPAS/R/TimeStratPetersenDiagErrorWHChinook.R
BTSPAS/R/PredictivePosterior_TSPDE.R
BTSPAS/R/PredictivePosteriorPlot_TSPDE_WHSteel.R
BTSPAS/R/run_openbugs.R
BTSPAS/R/TimeStratPetersenNonDiagErrorNPMarkAvail_fit.R
BTSPAS/R/RunTime.R
BTSPAS/R/trace_plot.R
BTSPAS/R/PredictivePosterior_TSPDE_WHChinook2.r
BTSPAS/R/TimeStratPetersenDiagError_fit.R
BTSPAS/R/PredictivePosteriorPlot_TSPDE_WHChinook.R
BTSPAS/R/TimeToTargetRunSize.r
BTSPAS/R/PredictivePosteriorPlot_TSPNDE.R
BTSPAS/R/TimeStratPetersenNonDiagErrorNPMarkAvail.R
BTSPAS/R/PredictivePosteriorPlot_TSPDE.R
BTSPAS/R/zzz.R
BTSPAS/MD5
BTSPAS/README
BTSPAS/DESCRIPTION
BTSPAS/man
BTSPAS/man/BTSPAS-package.Rd
BTSPAS/man/TimeStratPetersenDiagErrorWHChinook_fit.Rd
BTSPAS/man/TimeToTargetRunSize.Rd
BTSPAS/man/logit.Rd
BTSPAS/man/trace_plot.Rd
BTSPAS/man/BTSPAS-internal.Rd
BTSPAS/man/TimeStratPetersenDiagErrorWHSteel.rd
BTSPAS/man/TimeStratPetersenNonDiagError_fit.Rd
BTSPAS/man/TimeStratPetersenDiagError_fit.Rd