BTSPAS: Bayesian Time-Strat. Population Analysis

BTSPAS provides advanced Bayesian methods to estimate abundance and run-timing from temporally-stratified Petersen mark-recapture experiments. Methods include hierarchical modelling of the capture probabilities and spline smoothing of the daily run size. This version uses JAGS to sample from the posterior distribution.

AuthorCarl J Schwarz <cschwarz@stat.sfu.ca> and Simon J Bonner <simon.bonner@uky.edu>
Date of publication2014-08-26 07:51:36
MaintainerCarl J Schwarz <cschwarz@stat.sfu.ca>
LicenseGPL (>= 2)
Version2014.0901
http://www.stat.sfu.ca/~cschwarz/Consulting/Trinity/Phase2

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Files in this package

BTSPAS
BTSPAS/inst
BTSPAS/inst/CITATION
BTSPAS/inst/NEWS.Rd
BTSPAS/NAMESPACE
BTSPAS/demo
BTSPAS/demo/demo-TSPDE-WHsteel.r
BTSPAS/demo/demo-TSPNDENP-error.r
BTSPAS/demo/demo-TSPDE.r
BTSPAS/demo/demo-TSPDE-WHchinook.r
BTSPAS/demo/demo-TSPNDE.r
BTSPAS/demo/demo-TSPDE-spline-in-logitP.r
BTSPAS/demo/demo-TSPDE-WHchinook2.r
BTSPAS/demo/demo-TSPNDENP-small.r
BTSPAS/demo/demo-TSPNDENP-small-prior-movement.r
BTSPAS/demo/00Index
BTSPAS/demo/demo-TSPNDE-conne-2009.r
BTSPAS/demo/demo-TSPNDENP-conne-2009-prior-movement.r
BTSPAS/demo/demo-TSPDE-cov.r
BTSPAS/demo/demo-TSPNDENP-conne-2009.r
BTSPAS/demo/demo-TSPNDENP-fall-back.r
BTSPAS/demo/demo-TSPDE-error.r
BTSPAS/R
BTSPAS/R/PredictivePosteriorPlot_TSPDE_WHChinook2.r
BTSPAS/R/TimeStratPetersenNonDiagError.R BTSPAS/R/TimeStratPetersenNonDiagErrorNP.R BTSPAS/R/initial_values.R BTSPAS/R/TimeStratPetersenNonDiagError_fit.R BTSPAS/R/logit.R BTSPAS/R/TimeStratPetersenDiagErrorWHChinook_fit.R BTSPAS/R/prior.muTT.functions.R BTSPAS/R/PredictivePosterior_TSPDE_WHChinook.R BTSPAS/R/PredictivePosterior_TSPNDENP.R BTSPAS/R/plot_logit.R BTSPAS/R/PredictivePosterior_TSPNDE.R BTSPAS/R/TimeStratPetersenDiagErrorWHChinook2_fit.R BTSPAS/R/TimeStratPetersenDiagErrorWHSteel_fit.R BTSPAS/R/PredictivePosterior_TSPDE_WHSteel.R
BTSPAS/R/run_MCMC.r
BTSPAS/R/TimeStratPetersenNonDiagErrorNP_fit.R BTSPAS/R/TimeStratPetersenDiagError.R BTSPAS/R/SimplePetersen.R BTSPAS/R/TimeStratPetersenDiagErrorWHChinook2.R BTSPAS/R/run_jags.R BTSPAS/R/TimeStratPetersenDiagErrorWHSteel.R BTSPAS/R/TimeStratPetersenDiagErrorWHChinook.R BTSPAS/R/PredictivePosterior_TSPDE.R BTSPAS/R/PredictivePosteriorPlot_TSPDE_WHSteel.R BTSPAS/R/run_openbugs.R BTSPAS/R/TimeStratPetersenNonDiagErrorNPMarkAvail_fit.R BTSPAS/R/RunTime.R BTSPAS/R/trace_plot.R
BTSPAS/R/PredictivePosterior_TSPDE_WHChinook2.r
BTSPAS/R/TimeStratPetersenDiagError_fit.R BTSPAS/R/PredictivePosteriorPlot_TSPDE_WHChinook.R
BTSPAS/R/TimeToTargetRunSize.r
BTSPAS/R/PredictivePosteriorPlot_TSPNDE.R BTSPAS/R/TimeStratPetersenNonDiagErrorNPMarkAvail.R BTSPAS/R/PredictivePosteriorPlot_TSPDE.R BTSPAS/R/zzz.R
BTSPAS/MD5
BTSPAS/README
BTSPAS/DESCRIPTION
BTSPAS/man
BTSPAS/man/BTSPAS-package.Rd BTSPAS/man/TimeStratPetersenDiagErrorWHChinook_fit.Rd BTSPAS/man/TimeToTargetRunSize.Rd BTSPAS/man/logit.Rd BTSPAS/man/trace_plot.Rd BTSPAS/man/BTSPAS-internal.Rd
BTSPAS/man/TimeStratPetersenDiagErrorWHSteel.rd
BTSPAS/man/TimeStratPetersenNonDiagError_fit.Rd BTSPAS/man/TimeStratPetersenDiagError_fit.Rd

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