BayClone2: Bayesian Feature Allocation Model for Tumor Heterogeneity
Version 1.1

A Bayesian feature allocation model is implemented for inference on tumor heterogeneity using next-generation sequencing data. The model identifies the subclonal copy number and single nucleotide mutations at a selected set of loci and provides inference on genetic tumor variation.

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AuthorJuhee Lee, Peter Mueller, Subhajit Sengupta, Kamalakar Gulukota, Yuan Ji
Date of publication2014-12-24 06:08:04
MaintainerSubhajit Sengupta <subhajit06@gmail.com>
LicenseGPL-3 | file LICENSE
Version1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("BayClone2")

Man pages

BayClone2: BayClone2 function
BayClone2_Simulation1_mut: Number of mutated reads (n) for simulation 1 in Lee et al...
BayClone2_Simulation1_tot: Total number of reads (N) for simulation 1 in Lee et al...
export_N_n: export_N_n function
fn_post_C: fn_post_C function
fn_posterior_point: fn_posterior_point function

Functions

BayClone2 Man page Source code
BayClone2_Simulation1_mut Man page
BayClone2_Simulation1_tot Man page
export_N_n Man page Source code
fn.MCMC.CNV Source code
fn.Tr.CNV Source code
fn_post_C Man page Source code
fn_posterior_point Man page Source code

Files

src
src/BayClone2.cpp
NAMESPACE
data
data/BayClone2_Simulation1_mut.txt.gz
data/BayClone2_Simulation1_tot.txt.gz
R
R/fn_BayClone2.R
MD5
DESCRIPTION
man
man/BayClone2.Rd
man/export_N_n.Rd
man/BayClone2_Simulation1_tot.Rd
man/fn_posterior_point.Rd
man/BayClone2_Simulation1_mut.Rd
man/fn_post_C.Rd
LICENSE
BayClone2 documentation built on May 20, 2017, 2:15 a.m.