BayClone2: Bayesian Feature Allocation Model for Tumor Heterogeneity

A Bayesian feature allocation model is implemented for inference on tumor heterogeneity using next-generation sequencing data. The model identifies the subclonal copy number and single nucleotide mutations at a selected set of loci and provides inference on genetic tumor variation.

Install the latest version of this package by entering the following in R:
install.packages("BayClone2")
AuthorJuhee Lee, Peter Mueller, Subhajit Sengupta, Kamalakar Gulukota, Yuan Ji
Date of publication2014-12-24 06:08:04
MaintainerSubhajit Sengupta <subhajit06@gmail.com>
LicenseGPL-3 | file LICENSE
Version1.1

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Files

src
src/BayClone2.cpp
NAMESPACE
data
data/BayClone2_Simulation1_mut.txt.gz
data/BayClone2_Simulation1_tot.txt.gz
R
R/fn_BayClone2.R
MD5
DESCRIPTION
man
man/BayClone2.Rd man/export_N_n.Rd man/BayClone2_Simulation1_tot.Rd man/fn_posterior_point.Rd man/BayClone2_Simulation1_mut.Rd man/fn_post_C.Rd
LICENSE

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