BcDiag: Diagnostics Plots for Bicluster Data
Version 1.0.10

Diagnostic tools based on two-way anova and median-polish residual plots for Bicluster output obtained from packages; "biclust" by Kaiser et al.(2008),"isa2" by Csardi et al. (2010) and "fabia" by Hochreiter et al. (2010). Moreover, It provides visualization tools for bicluster output and corresponding non-bicluster rows- or columns outcomes. It has also extended the idea of Kaiser et al.(2008) which is, extracting bicluster output in a text format, by adding two bicluster methods from the fabia and isa2 R packages.

AuthorAregay Mengsteab, Martin Otava, Tatsiana Khamiakova, Ewoud De Troyer
Date of publication2015-10-17 15:53:37
MaintainerEwoud De Troyer <ewoud.detroyer@uhasselt.be>
LicenseGPL-3
Version1.0.10
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("BcDiag")

Popular man pages

anomedOnlybic: The anomedOnlybic function
breastc: Gene Expression Data Example
dlbcl: Gene Expression Data Example
exploreBic: The exploreBic function
exploreOnlybic: The exploreOnlybic function
profileBic: The profileBic function.
writeBic: The writeBic function
See all...

All man pages Function index File listing

Man pages

anomedOnlybic: The anomedOnlybic function
BcDiag: The BCDiag package
breastc: Gene Expression Data Example
dlbcl: Gene Expression Data Example
exploreBic: The exploreBic function
exploreOnlybic: The exploreOnlybic function
profileBic: The profileBic function.
writeBic: The writeBic function

Functions

BcDiag-package Man page
anomedOnlybic Man page Source code
breastc Man page
checkcurrentgrid Source code
dlbcl Man page
exploreBic Man page Source code
exploreCalc Source code
exploreOnlybic Man page Source code
explorePlot Source code
indexedBic Source code
isa2biclust Source code
plotOnlybic Source code
profileAll Source code
profileBic Man page Source code
writeBic Man page Source code

Files

NAMESPACE
data
data/breastc.rda
data/dlbcl.rda
R
R/profileBic.R
R/exploreBic.R
R/exploreOnlybic.R
R/support.R
R/writeBic.R
R/anomedOnlybic.R
MD5
DESCRIPTION
man
man/BcDiag.Rd
man/breastc.Rd
man/exploreBic.Rd
man/anomedOnlybic.Rd
man/profileBic.Rd
man/exploreOnlybic.Rd
man/writeBic.Rd
man/dlbcl.Rd
BcDiag documentation built on May 19, 2017, 4:16 p.m.

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