Bclim: Bayesian Palaeoclimate Reconstruction from Pollen Data

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Takes pollen and chronology data from lake cores and produces a Bayesian posterior distribution of palaeoclimate from that location after fitting a non-linear non-Gaussian state-space model. For more details see the paper Parnell, A. C., et al. (2015), Bayesian inference for palaeoclimate with time uncertainty and stochastic volatility. Journal of the Royal Statistical Society: Series C (Applied Statistics), 64: 115–138.

Author
Andrew Parnell
Date of publication
2016-06-12 09:40:19
Maintainer
Andrew Parnell <Andrew.Parnell@ucd.ie>
License
GPL (>= 2)
Version
3.1.0

View on CRAN

Man pages

Bclim-package
Create palaeoclimate reconstructions from pollen cores
climate_histories
Create Bclim climate_histories
layer_clouds
Function to approximate pollen layers as climate clouds
plot.climate_histories
Plots of posterior Bclim climate histories
plot.layer_clouds
Plots of Bclim layer clouds
summary.climate_histories
Summarises the output created by 'climate_histories'

Files in this package

Bclim
Bclim/inst
Bclim/inst/extdata
Bclim/inst/extdata/Roya.dat
Bclim/inst/extdata/Monticchio_pollen.txt
Bclim/inst/extdata/Roya_pollen_depths.txt
Bclim/inst/extdata/Roya_pollen.txt
Bclim/inst/extdata/Monticchio_chron.txt
Bclim/inst/doc
Bclim/inst/doc/Bclim.Rmd
Bclim/inst/doc/Bclim.R
Bclim/inst/doc/Bclim.html
Bclim/src
Bclim/src/use.h
Bclim/src/PalaeoRecon3D.c
Bclim/src/use.c
Bclim/src/BclimMCMC3D.c
Bclim/NAMESPACE
Bclim/R
Bclim/R/plot.climate_histories.R
Bclim/R/plot.layer_clouds.R
Bclim/R/summary.climate_histories.R
Bclim/R/climate_histories.R
Bclim/R/layer_clouds.R
Bclim/vignettes
Bclim/vignettes/Roya.dat
Bclim/vignettes/Bclim.Rmd
Bclim/vignettes/Roya_pollen_depths.txt
Bclim/vignettes/Roya_pollen.txt
Bclim/MD5
Bclim/build
Bclim/build/vignette.rds
Bclim/DESCRIPTION
Bclim/man
Bclim/man/plot.layer_clouds.Rd
Bclim/man/layer_clouds.Rd
Bclim/man/plot.climate_histories.Rd
Bclim/man/climate_histories.Rd
Bclim/man/Bclim-package.Rd
Bclim/man/summary.climate_histories.Rd