MMfunc: MMfunc

In BiOFI: Feature Identification Between Metabolome and Microbiome in Disease and Health

MMfunc

Description

A function is used to group microbes and metabolites in shared functional pathways based on different threshold setting according to functional pathway IIS, microbes IIS and metabolites IIS.

Usage

MMfunc(IIS, path_IISthre = 2.5, mm_IISthre = 2)

Arguments

IIS	The result returned by IIS() function.
path_IISthre	A IIS threshold value to identify the shared pathways.
mm_IISthre	A IIS threshold value to identify the microbes/metabolites affiliation with the shared pathways.

Value

MMfunc_res A list including shared functional pathways.

Examples

IIScore <- IIS(microApath = micro.eg, metaApath = metabo.eg,
               conf = confounder.eg, groupInfo = groupInfo.eg)
MMfunc_res <- MMfunc(IIS = IIScore)

BiOFI documentation built on Sept. 22, 2022, 9:07 a.m.