BigQuic: Big Quadratic Inverse Covariance Estimation
Version 1.1-7

Use Newton's method, coordinate descent, and METIS clustering to solve the L1 regularized Gaussian MLE inverse covariance matrix estimation problem.

Browse man pages Browse package API and functions Browse package files

AuthorKhalid B. Kunji [aut, cre], Cho-Jui Hsieh [ctb], Matyas A. Sustik [ctb], Inderjit S. Dhillon [ctb], Pradeep Ravikumar [ctb], Tuo Zhao [ctb], Xingguo Li [ctb], Han Liu [ctb], Kathryn Roeder [ctb], John Lafferty [ctb], Larry Wasserman [ctb], George Karypis [ctb], Melissa O'Neill [ctb], Richard Henderson [ctb]
Date of publication2017-02-02 13:45:41
MaintainerKhalid B. Kunji <kkunji@hbku.edu.qa>
LicenseGPL (>= 3) | file LICENSE
Version1.1-7
URL https://www.r-project.org https://www.cs.utexas.edu/users/sustik/QUIC http://glaros.dtc.umn.edu/gkhome/views/metis http://www.pcg-random.org/download.html https://gcc.gnu.org/projects/gomp/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("BigQuic")

Man pages

BigQuicHelper: BigQuic C++ Caller
BigQuic_object_builder: BigQuic Object Builder
BigQuic_object-class: Class '"BigQuic_object"'
BigQuic-package: Big Quadratic Inverse Covariance Estimation
BigQuic.select: BigQuic Select
generate_sample: Generate Sample
plot.BigQuic_object: Plot

Functions

BigQuic Man page Source code
BigQuic.select Man page Source code
BigQuicHelper Man page Source code
BigQuic_object-class Man page
BigQuic_object_builder Man page
generate_sample Man page Source code
plot.BigQuic_object Man page Source code

Files

inst
inst/COPYRIGHTS
inst/extdata
inst/extdata/testInput
src
src/Makevars
src/util.c
src/bigquic-run.cpp
src/mkwayrefine.c
src/proto.h
src/mkmetis.c
src/kwayvolrefine.c
src/mpmetis.c
src/separator.c
src/pmetis.c
src/timing.c
src/metis.h
src/omp.h
src/mrefine.c
src/balance.c
src/parmetis.c
src/kmetis.c
src/pcg_basic.h
src/kwayfm.c
src/ometis.c
src/meshpart.c
src/rename.h
src/minitpart.c
src/mmatch.c
src/stat.c
src/kwayrefine.c
src/bigquic.cpp
src/memory.c
src/myqsort.c
src/graph.c
src/struct.h
src/fortran.c
src/mrefine2.c
src/mutil.c
src/mincover.c
src/fm.c
src/mfm2.c
src/frename.c
src/macros.h
src/ccgraph.c
src/bucketsort.c
src/pqueue.c
src/mcoarsen.c
src/debug.c
src/initpart.c
src/compress.c
src/subdomains.c
src/kwayvolfm.c
src/match.c
src/sfm.c
src/refine.c
src/mesh.c
src/srefine.c
src/mbalance.c
src/kvmetis.c
src/mbalance2.c
src/minitpart2.c
src/defs.h
src/RcppExports.cpp
src/estmem.c
src/pcg_basic.c
src/coarsen.c
src/bigquic.h
src/mmd.c
src/mfm.c
src/mkwayfmh.c
NAMESPACE
R
R/BigQuic.select.R
R/BigQuic.R
R/RcppExports.R
MD5
build
build/partial.rdb
DESCRIPTION
man
man/BigQuic_object-class.Rd
man/plot.BigQuic_object.Rd
man/BigQuic.select.Rd
man/BigQuic-package.Rd
man/BigQuic_object_builder.Rd
man/generate_sample.Rd
man/BigQuicHelper.Rd
LICENSE
BigQuic documentation built on May 19, 2017, 9:24 a.m.