Man pages for BinMat
Processes Binary Data Obtained from Fragment Analysis

BinMatInput_ordinationExample input data containing a consolidated binary matrix...
BinMatInput_repsExample input data containing a binary matrix comprising...
check.dataChecks binary matrix for unwanted characters.
consolidateConsolidates replicate pairs in a binary matrix.
errorsCalculates Jaccard and Euclidean error rates.
group.namesOutputs group names specified in the input file for the...
nmdsCreates a non-metric multidimensional scaling plot (nMDS).
peak.removeRemoves samples with peaks equal to or less than a specified...
peaks.consolidatedCalculates peak numbers for a consolidated data set (total,...
peaks.originalCalculates peak numbers for the data set with all replicates...
screeDraws a scree plot.
shepardCreates a shepard plot.
upgmaDraws a hierarchical clustering tree (UPGMA).
BinMat documentation built on March 13, 2020, 3:11 a.m.