bdapply | Apply a function to each SNP in a binary dosage file |
bdmerge | Merge binary dosage files together |
genapply | Apply a function to each SNP in a gen, impute2, file |
gentobd | Convert a gen file to a binary dosage file |
getaaf | Calculate alternate allele frequency |
getbdinfo | Get information about a binary dosage file |
getgeninfo | Get information about a gen, impute2, file |
getmaf | Calculate minor allele frequency |
getrsq | Calculate imputation r squared |
getsnp | Read SNP data from a binary dosage file |
getvcfinfo | Get information about a vcf file |
vcfapply | Apply a function to each SNP in a vcf file |
vcftobd | Convert a VCF file to a binary dosage file |
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