Man pages for BinaryDosage
Creates, Merges, and Reads Binary Dosage Files
| bd1tobd5 | Convert a format 1 binary dosage file to Format 5 |
| bd2tobd5 | Convert a format 2 binary dosage file to Format 5 |
| bd3tobd5 | Convert a format 3 binary dosage file to Format 5 |
| bd4tobd5 | Convert a format 4 binary dosage file to Format 5 |
| bdapply | Apply a function to each SNP in a binary dosage file |
| bdmerge | Merge binary dosage files together |
| closebd5con | Close a persistent Format 5 connection |
| genapply | Apply a function to each SNP in a gen, impute2, file |
| gentobd | Convert a gen file to a binary dosage file |
| getaaf | Calculate alternate allele frequency |
| getbd5snp | Read a SNP from a Format 5 binary dosage file |
| getbd5snp_buf | Read a Format 5 SNP into pre-allocated vectors (buffered... |
| getbd5snp_con | Read a Format 5 SNP using a persistent open connection |
| getbdinfo | Get information about a binary dosage file |
| getgeninfo | Get information about a gen, impute2, file |
| getmaf | Calculate minor allele frequency |
| getrsq | Calculate imputation r squared |
| getsnp | Read SNP data from a binary dosage file |
| getvcfinfo | Get information about a vcf file |
| mergebd | Merge Format 5 binary dosage files |
| openbd5con | Open a persistent connection to a Format 5 binary dosage file |
| subsetbd | Subset a binary dosage file |
| updatebd | Update a binary dosage file to Format 5 |
| vcfapply | Apply a function to each SNP in a vcf file |
| vcftobd | Convert a VCF file to Format 5 binary dosage files |
| vcftobdlegacy | Convert a VCF file to a binary dosage file |
