Description Usage Arguments Examples
Arcs are defined by beginning and ending genomic coordinates
1 2 3 | BioCircosArcTrack(trackname, chromosomes, starts, ends,
colors = "#40B9D4", labels = "", opacities = 1, maxRadius = 0.9,
minRadius = 0.5, ...)
|
trackname |
The name of the new track. |
chromosomes |
A vector containing the chromosomes on which each arc is found. Values should match the chromosome names given in the genome parameter of the BioCircos function. |
starts, ends |
Vectors containing the coordinates on which each arc begins or ends. Values should be inferior to the chromosome lengths given in the genome parameter of the BioCircos function. |
colors |
The colors for each arc. Can be a RColorBrewer palette name used to generate one color per arc, or a character object or vector of character objects stating RGB values in hexadecimal format or base R colors. If the vector is shorter than the number of arcs, values will be repeated. |
labels |
One or multiple character objects to label each arc. |
opacities |
One or multiple opacity values for the arcs, between 0 and 1. |
minRadius, maxRadius |
Where the track should begin and end, in proportion of the inner radius of the plot. |
... |
Ignored |
1 | BioCircos(BioCircosArcTrack('ArcTrack', chromosomes = 1:5, starts = 2e+7*1:5, ends = 2.5e+7*2:6))
|
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