check_if_state_is_allowed: Check if a geographic range/state is allowed, given an...

Description Usage Arguments Details Value Note Author(s) References See Also Examples

View source: R/calc_loglike_sp_v01.R

Description

If the user has specified a matrix stating which areas are allowed to be connected (and thus have a species with a range in both areas), this function checks if the input list of areas (as a 0-based vector of areas) in a single state/geographic range is consistent with the areas-allowed matrix.

Usage

1
2
  check_if_state_is_allowed(state_0based_indexes,
    areas_allowed_mat)

Arguments

state_0based_indexes

The input state is a 0-based vector of area indices.

areas_allowed_mat

A matrix (number of areas x number of areas) with 1s indicating allowed connections between areas, and 0s indicating disallowed connections.

Details

This function may be used by e.g. apply.

Value

TRUE or FALSE

Note

Go BEARS!

Author(s)

Nicholas J. Matzke matzke@berkeley.edu

References

http://phylo.wikidot.com/matzke-2013-international-biogeography-society-poster

Matzke_2012_IBS

See Also

apply

Examples

1
test=1

Example output

Loading required package: rexpokit
Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve

Loading required package: Rcpp
Loading required package: cladoRcpp
Loading required package: ape
Loading required package: phylobase

Attaching package: 'phylobase'

The following object is masked from 'package:ape':

    edges

BioGeoBEARS documentation built on May 29, 2017, 8:36 p.m.

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