get_indices_of_branches_under_tips: Get the indices of the branches (row number in edge matrix)...
In BioGeoBEARS: BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts

Description Usage Arguments Value Note Author(s) References See Also Examples

View source: R/BioGeoBEARS_generics_v1.R

A utility function. Gets the indices of the branches (row number in edge matrix) below each tip.

1	get_indices_of_branches_under_tips(obj)

obj

An ape phylo object

branchnums_under_tips The indices of the branches (row number in edge matrix) below each tip.

Go BEARS!

Nicholas J. Matzke matzke@berkeley.edu

http://phylo.wikidot.com/matzke-2013-international-biogeography-society-poster

Matzke_2012_IBS

prt, chainsaw2, get_indices_of_tip_nodes, get_indices_where_list1_occurs_in_list2_noNA

test=1

Loading required package: rexpokit
Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve

Loading required package: Rcpp
Loading required package: cladoRcpp
Loading required package: ape
Loading required package: phylobase

Attaching package: 'phylobase'

The following object is masked from 'package:ape':

    edges