get_simparams: Get the simulated model parameters from the row of a table
In BioGeoBEARS: BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts

Description Usage Arguments Value Note Author(s) References See Also Examples

View source: R/BioGeoBEARS_simulate_v1.R

Basically this function assigns probability 1 to the simulated state/geographic range, and probability 0 for the other states/geographic ranges. These data – the simulated truth – can then be compared to the inferred probabilities for the states, from e.g. get_ML_probs.

1	get_simparams(simhist_row)

simhist_row

A row from a table, which must have a column named simulated_states_by_node_txt.

simparams A list of the parameter values.

Go BEARS!

Nicholas J. Matzke matzke@berkeley.edu

http://phylo.wikidot.com/matzke-2013-international-biogeography-society-poster

Matzke_2012_IBS

simulate_biogeog_history, infprobs_to_probs_of_each_area

testval=1

Loading required package: rexpokit
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Attaching package: 'phylobase'

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