get_simstates: Load the simulation information from an underscore delimited...
In BioGeoBEARS: BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts
Description
Usage
Arguments
Value
Note
Author(s)
References
See Also
Examples
View source: R/BioGeoBEARS_simulate_v1.R
Description
If the simulated states are stored in a big text file, it
can be useful to store them as a single string in a
single cell per row, so that the number of columns
doesn't have to change with each different-sized tree.
This function extracts the simulated states from this
format.
Usage
1
get_simstates(simhist_row)
Arguments
simhist_row
A row from a table, which must have a
column named simulated_states_by_node_txt.
Value
simulated_states_by_node A numeric vector of
0-based state indices.
Note
Go BEARS!
Author(s)
Nicholas J. Matzke matzke@berkeley.edu
References
http://phylo.wikidot.com/matzke-2013-international-biogeography-society-poster
Matzke_2012_IBS
See Also
Examples
1
testval=1
Example output
Loading required package: rexpokit
Loading required package: cladoRcpp
Loading required package: ape
Loading required package: phylobase
Attaching package: 'phylobase'
The following object is masked from 'package:ape':
edges
BioGeoBEARS documentation built on May 29, 2017, 8:36 p.m.
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Description Usage Arguments Value Note Author(s) References See Also Examples
View source: R/BioGeoBEARS_simulate_v1.R
Description
If the simulated states are stored in a big text file, it can be useful to store them as a single string in a single cell per row, so that the number of columns doesn't have to change with each different-sized tree. This function extracts the simulated states from this format.
Usage
1 | get_simstates(simhist_row)
|
Arguments
simhist_row |
A row from a table, which must have a
column named |
Value
simulated_states_by_node A numeric vector of
0-based state indices.
Note
Go BEARS!
Author(s)
Nicholas J. Matzke matzke@berkeley.edu
References
http://phylo.wikidot.com/matzke-2013-international-biogeography-society-poster
Matzke_2012_IBS
See Also
Examples
1 | testval=1
|
Example output
Loading required package: rexpokit
Loading required package: cladoRcpp
Loading required package: ape
Loading required package: phylobase
Attaching package: 'phylobase'
The following object is masked from 'package:ape':
edges
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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