readfiles_BioGeoBEARS_run: Read in the extra input files, if any

Description Usage Arguments Value Note Author(s) References See Also Examples

View source: R/BioGeoBEARS_classes_v1.R

Description

This function reads input files for stratification, constraints, and detection, i.e., everything except the tree and geography files. E.g., areas_allowed_fn file is just a list of distance matrices, separated by blank lines, from youngest to oldest.

Usage

1

Arguments

inputs

The inputs list

Value

inputs The modified inputs list

Note

Go BEARS!

Author(s)

Nicholas J. Matzke matzke@berkeley.edu

References

http://phylo.wikidot.com/matzke-2013-international-biogeography-society-poster

Matzke_2012_IBS

See Also

define_BioGeoBEARS_run, read_times_fn, read_distances_fn, read_dispersal_multipliers_fn, read_area_of_areas_fn, read_areas_allowed_fn, read_detections, read_controls

Examples

1
test=1

Example output

Loading required package: rexpokit
Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve

Loading required package: Rcpp
Loading required package: cladoRcpp
Loading required package: ape
Loading required package: phylobase

Attaching package: 'phylobase'

The following object is masked from 'package:ape':

    edges

BioGeoBEARS documentation built on May 29, 2017, 8:36 p.m.