symbolic_cell_to_relprob_cell: Convert symbolic cell (a text equation) to relprob matrix (a...
In BioGeoBEARS: BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts

Description Usage Arguments Details Value Note Author(s) References See Also Examples

This is a utility function for symbolic_to_P_matrix and symbolic_to_Q_matrix.

1 2	symbolic_cell_to_relprob_cell(charcell, cellsplit = "", mergesym = "*", d = 0.1, e = 0.01, ...)

`charcell`	The text formula.
`cellsplit`	The symbol to split the formulas on. Default "\\+" (plus symbol, with escape code).
`mergesym`	The symbol to merge the formulas with. Default "+".
`d`	The dispersal/range expansion rate. Default `d=0.1`.
`e`	The extinction/range contraction rate. Default `e=0.01`.
`...`	Additional arguments to pass to `strsplit`.

This function can be used in sapply. It still will not be very fast compared to the calculations in cladoRcpp, but can be useful for demonstrative purposes.

cellval The output cell value.

Go BEARS!

Nicholas J. Matzke matzke@berkeley.edu

http://phylo.wikidot.com/matzke-2013-international-biogeography-society-poster

Matzke_2012_IBS

symbolic_to_P_matrix

testval=1

charcell = "1*d+1*d"

# Right
cellval = symbolic_cell_to_relprob_cell(charcell, cellsplit="yadda",
mergesym="", d=0.1, e=0.01)
cellval

# Wrong
cellval = symbolic_cell_to_relprob_cell(charcell, cellsplit="\\+",
mergesym="*", d=0.1, e=0.01)
cellval

# Right
cellval = symbolic_cell_to_relprob_cell(charcell, cellsplit="\\+",
mergesym="+", d=0.1, e=0.01)
cellval