tipranges-class: The tipranges class

In BioGeoBEARS: BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts

Description

This class holds geographic range data for each tip in a phylogeny.

Details

Geographic range data can be read into a tipranges class object with BioGeoBEARS functions, e.g. define_tipranges_object or getareas_from_tipranges_object.

Class tipranges is an extension of the data.frame class. It is used for holding discrete geographic range data for the tips on a phylogeny. Geographic ranges are represented with bit encoding (0/1) indicating absence or presence in each possible area.

This is just a data.frame with: rows = taxanames
columns = area names
cells = 0/1 representing empty/occupied

Slots

df:

Data.frame of class "numeric", containing data from df

Note

Go BEARS!

Author(s)

Nicholas J. Matzke [e-mail]

References

http://phylo.wikidot.com/matzke-2013-international-biogeography-society-poster

Matzke_2012_IBS

See Also

define_tipranges_object, getareas_from_tipranges_object, areas_list_to_states_list_old, areas_list_to_states_list_new, tipranges_to_tip_condlikes_of_data_on_each_state

Examples

tipranges_object = define_tipranges_object()
tipranges_object

BioGeoBEARS documentation built on May 29, 2017, 8:36 p.m.