Files in BioMonTools
Biomonitoring and Bioassessment Calculations
MD5
NEWS
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/metric_stats2.R
R/data.R
R/metric_values.R
R/metric_stats.R
R/qc_taxa.R
R/qc_checks.R
R/assign_indexclass.R
R/metric_scores.R
R/MapTaxaObs.R
R/metric_values_excel.R
R/markExcluded.R
R/rarify.R
R/taxa_translate.R
inst/doc/vignette_NewIndex.Rmd
inst/doc/vignette_NewIndex.R
inst/doc/vignette_BioMonTools.R
inst/doc/vignette_BioMonTools.html
inst/doc/vignette_MapTaxaObs.Rmd
inst/doc/vignette_MapTaxaObs.R
inst/doc/vignette_MapTaxaObs.html
inst/doc/vignette_BioMonTools.Rmd
inst/doc/vignette_NewIndex.html
inst/extdata/_Input_HiGradHiElev_noExclude_20220108_small.csv
inst/extdata/MetricNames.xlsx
inst/extdata/Data_Benthos.xlsx
inst/extdata/IndexClass.xlsx
inst/extdata/MetricFlags.xlsx
inst/extdata/MetricScoring.xlsx
inst/extdata/taxa_official/CHAR_Bugs.csv
inst/extdata/taxa_official/_pick_files.csv
inst/extdata/taxa_official/CHAR_Bugs_metadata.csv
inst/extdata/taxa_official/ORWA_TAXATRANSLATOR_20221219b.csv
inst/extdata/taxa_official/ORWA_ATTRIBUTES_20221212.csv
inst/extdata/taxa_official/ORWA_TAXATRANSLATOR_20221219.csv
inst/extdata/taxa_official/CHAR_Fish.csv
inst/extdata/taxa_official/CHAR_Fish_metadata.csv
inst/extdata/taxa_official/ORWA_ATTRIBUTES_METADATA_20221117.csv
build/vignette.rds
tests/testthat.R
tests/testthat/test_assign_indexclass.R
tests/testthat/test_thresholds_numdigits.R
tests/testthat/test_qc_checks.R
tests/testthat/test_rarify.R
tests/testthat/test_metric_names.R
tests/testthat/test_metric_calc.R
tests/testthat/test_IndexClass.R
tests/testthat/test_metric_stats.R
tests/testthat/test_markExcluded.R
tests/testthat/test_MapTaxaObs.R
tests/testthat/test_taxa_translate.R
vignettes/.install_extras
vignettes/vignette_NewIndex.Rmd
vignettes/vignette_MapTaxaObs.Rmd
vignettes/ExcludeTaxaDecisionCrit.pdf
vignettes/vignette_BioMonTools.Rmd
data/data_mmi_dev_small.rda
data/data_Taxa_MA.rda
data/data_metval_scmb_ibi.rda
data/data_mmi_dev.rda
data/TaxaMaster_Ben_BCG_PacNW.rda
data/data_coral_bcg_metric_qc.rda
data/data_benthos_MBSS.rda
data/data_bio2rarify.rda
data/data_benthos_PacNW.rda
data/data_diatom_mmi_qc.rda
data/data_coral_bcg_metric_dev.rda
data/data_diatom_mmi_dev.rda
data/data_fish_MBSS.rda
man/metric.stats2.Rd
man/assign_IndexClass.Rd
man/metric.values.fish.Rd
man/metric.values.coral.Rd
man/rarify.Rd
man/data_coral_bcg_metric_dev.Rd
man/markExcluded.Rd
man/data_fish_MBSS.Rd
man/data_benthos_MBSS.Rd
man/data_coral_bcg_metric_qc.Rd
man/metric.stats.Rd
man/taxa_translate.Rd
man/data_mmi_dev_small.Rd
man/data_benthos_PacNW.Rd
man/data_bio2rarify.Rd
man/data_diatom_mmi_dev.Rd
man/MapTaxaObs.Rd
man/metric.values.algae.Rd
man/data_Taxa_MA.Rd
man/data_metval_scmb_ibi.Rd
man/metric.values.Rd
man/metvalgrpxl.Rd
man/qc_taxa.Rd
man/metric.values.bugs.Rd
man/metric.scores.Rd
man/data_diatom_mmi_qc.Rd
man/qc.checks.Rd
man/data_mmi_dev.Rd
man/TaxaMaster_Ben_BCG_PacNW.Rd
man/figures/logo.png
