Man pages for BioMonTools
Biomonitoring and Bioassessment Calculations
| assign_IndexClass | Assign Index_Class |
| data_benthos_MBSS | Benthic macroinvertebrate taxa data; MBSS |
| data_benthos_PacNW | Benthic macroinvertebrate taxa data; Pacific Northwest |
| data_bio2rarify | rarify example data |
| data_coral_bcg_metric_dev | Coral taxa data; Florida BCG. |
| data_coral_bcg_metric_qc | Coral metric value data; Florida BCG. |
| data_diatom_mmi_dev | Diatom taxa data; Indiana DEM |
| data_diatom_mmi_qc | Diatom metric value data; Indiana DEM |
| data_fish_MBSS | Fish data, MBSS |
| data_metval_scmb_ibi | data_metval_scmb_ibi |
| data_mmi_dev | Metric data for metric stats for mmi development |
| data_mmi_dev_small | Metric data for metric stats for mmi development |
| data_Taxa_MA | Estuary taxa data |
| MapTaxaObs | Taxa Observation Maps |
| markExcluded | Mark "exclude" (non-distinct / non-unique / ambiguous) taxa |
| metric.scores | Score metrics |
| metric.stats | Calculate metric statistics |
| metric.stats2 | Secondary metric statistics |
| metric.values | Calculate metric values |
| metric.values.algae | Calculate metric values, Algae |
| metric.values.bugs | Calculate metric values, Bugs |
| metric.values.coral | Calculate metric values, coral |
| metric.values.fish | Calculate metric values, Fish |
| metvalgrpxl | Metric values Groups to Excel |
| qc.checks | QC checks on metric values |
| qc_taxa | Quality Control Check on User Data Against Master Taxa List |
| rarify | Rarify (subsample) biological sample to fixed count |
| TaxaMaster_Ben_BCG_PacNW | TaxaMaster_Ben_BCG_PacNW |
| taxa_translate | Taxa Translate |
