BioTIME-plots: Plot slopes BioTIME

In BioTIMEr: Tools to Use and Explore the 'BioTIME' Database

Plot slopes BioTIME

Description

Plot slopes BioTIME

ggplot2 theme for BioTIME plots

Usage

plotSlopes(
  x,
  metric,
  cols,
  taxa = c("Amphibians & reptiles", "Birds", "Chromista", "Fish", "Fungi", "Mammals",
    "Plants"),
  method = c("metric", "taxa", "ind"),
  assemblageID,
  divType = c("alpha", "beta")
)

themeBioTIME(lp, fontSize, colx, coly)

Arguments

x	Parameter description
metric	If 'divtype' is alpha, 'metric' must be one of "S", "N", "maxN", "Shannon", "Simpson", "invSimpson", "PIE", "DomMc","expShannon". If 'divtype' is beta, 'metric' must be one of "JaccardDiss", "MorisitaHornDiss", "BrayCurtisDiss"
cols	Parameter description
taxa	Parameter description
method	Character can be one of "metric", "taxa", "ind"
assemblageID	Parameter description
divType	"alpha" or "beta"
lp	description
fontSize	description
colx	description
coly	description

Value

A plot

Examples

fig1 <- ggplot2::ggplot() +
          themeBioTIME("none", 12, "black", "grey90")

BioTIMEr documentation built on June 8, 2025, 10:02 a.m.