dot-euclidean_linker_cpp: Return the group number for each localization.

In Bioi: Biological Image Analysis

Description

Group PALM/iPALM localizations based on their physical separation distance

PALM/iPALM data results in a list of spatial coordinates for fluorophore localizations. This function groups nearby localizations if they are within the provided critical distance from each other.

Usage

.euclidean_linker_cpp(input, critDist, use_prog_bar = TRUE)

Arguments

input	A numeric matrix where each row is a localization and each column is a spatial axis.
critDist	The critical distance for which localizations nearer than this distance are deemed part of the same group.
use_prog_bar	A logical indicating whether a progress bar should be used. This must be set to false when running in parallel.

Author(s)

Zach Colburn

Examples

# Function call
## Not run: .euclidean_linker_cpp(inputMatrix, critDist)

Bioi documentation built on Jan. 11, 2020, 9:23 a.m.