Biopeak: Identification of Impulse-Like Gene Expression Changes in Short Genomic Series Data

Enables the user to systematically identify and visualize impulse-like gene expression changes within short genomic series experiments. In order to detect such activation peaks, the gene expression is treated as a signal that propagates along an experimental axis (time, temperature or other series conditions). Peaks are selected by exhaustive identification of local maximums and subsequent filtering based on a range of controllable parameters. Moreover, the 'Biopeak' package provides a series of data exploration tools including: expression profile plots, correlation heat maps and clustering functionalities.

Package details

AuthorDavid Lauenstein
MaintainerDavid Lauenstein <[email protected]>
LicenseGPL (>= 2)
Version1.0
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("Biopeak")

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Biopeak documentation built on Aug. 21, 2019, 5:10 p.m.