BootMRMR: Bootstrap-MRMR Technique for Informative Gene Selection
Version 0.1

Selection of informative features like genes, transcripts, RNA seq, etc. using Bootstrap Maximum Relevance and Minimum Redundancy technique from a given high dimensional genomic dataset. Informative gene selection involves identification of relevant genes and removal of redundant genes as much as possible from a large gene space. Main applications in high-dimensional expression data analysis (e.g. microarray data, NGS expression data and other genomics and proteomics applications).

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AuthorSamarendra Das <samarendra4849@gmail.com>
Date of publication2016-09-12 15:08:51
MaintainerSamarendra Das <samarendra4849@gmail.com>
LicenseGPL (>= 2)
Version0.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("BootMRMR")

Man pages

bmrmr.pval.cutoff: Selection of informative geneset based on statistical...
bmrmr.weight.cutoff: Selection of informative geneset using gene weights obtained...
bootmr.weight: Computation of weights for informative genes/ geneset...
geneslect.f: Informative gene set selection using F-score
mbmr.pval.cutoff: Selection of informative geneset based on statistical...
mbmr.weight.cutoff: Identification of informative geneset based on weights...
mrmr.cutoff: Informative geneset selection using MRMR weights
pval.bmrmr: Compuation of statistical significance values for genes using...
pval.mbmr: Computation of statistical significance values for genes...
rice_salt: A gene expression dataset of rice under salinity stress
topsis.meth: Selection of optimal gene selection method(s)/method(s)...
weight.mbmr: Computation of weights for informative gene selection using...
Weights.mrmr: Computation of MRMR weights for gene selection

Functions

Weights.mrmr Man page Source code
bmrmr.pval.cutoff Man page Source code
bmrmr.weight.cutoff Man page Source code
bootmr.weight Man page Source code
geneslect.f Man page Source code
mbmr.pval.cutoff Man page Source code
mbmr.weight.cutoff Man page Source code
mrmr.cutoff Man page Source code
pval.bmrmr Man page Source code
pval.mbmr Man page Source code
rice_salt Man page
topsis.meth Man page Source code
weight.mbmr Man page Source code

Files

NAMESPACE
data
data/rice_salt.rda
R
R/BoootMRMR.R
MD5
DESCRIPTION
man
man/mrmr.cutoff.Rd
man/pval.mbmr.Rd
man/Weights.mrmr.Rd
man/rice_salt.Rd
man/pval.bmrmr.Rd
man/bmrmr.pval.cutoff.Rd
man/geneslect.f.Rd
man/weight.mbmr.Rd
man/bmrmr.weight.cutoff.Rd
man/bootmr.weight.Rd
man/topsis.meth.Rd
man/mbmr.pval.cutoff.Rd
man/mbmr.weight.cutoff.Rd
BootMRMR documentation built on May 19, 2017, 7:37 a.m.