BootMRMR: Bootstrap-MRMR Technique for Informative Gene Selection

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Selection of informative features like genes, transcripts, RNA seq, etc. using Bootstrap Maximum Relevance and Minimum Redundancy technique from a given high dimensional genomic dataset. Informative gene selection involves identification of relevant genes and removal of redundant genes as much as possible from a large gene space. Main applications in high-dimensional expression data analysis (e.g. microarray data, NGS expression data and other genomics and proteomics applications).

Author
Samarendra Das <samarendra4849@gmail.com>
Date of publication
2016-09-12 15:08:51
Maintainer
Samarendra Das <samarendra4849@gmail.com>
License
GPL (>= 2)
Version
0.1

View on CRAN

Man pages

bmrmr.pval.cutoff
Selection of informative geneset based on statistical...
bmrmr.weight.cutoff
Selection of informative geneset using gene weights obtained...
bootmr.weight
Computation of weights for informative genes/ geneset...
geneslect.f
Informative gene set selection using F-score
mbmr.pval.cutoff
Selection of informative geneset based on statistical...
mbmr.weight.cutoff
Identification of informative geneset based on weights...
mrmr.cutoff
Informative geneset selection using MRMR weights
pval.bmrmr
Compuation of statistical significance values for genes using...
pval.mbmr
Computation of statistical significance values for genes...
rice_salt
A gene expression dataset of rice under salinity stress
topsis.meth
Selection of optimal gene selection method(s)/method(s)...
weight.mbmr
Computation of weights for informative gene selection using...
Weights.mrmr
Computation of MRMR weights for gene selection

Files in this package

BootMRMR
BootMRMR/NAMESPACE
BootMRMR/data
BootMRMR/data/rice_salt.rda
BootMRMR/R
BootMRMR/R/BoootMRMR.R
BootMRMR/MD5
BootMRMR/DESCRIPTION
BootMRMR/man
BootMRMR/man/mrmr.cutoff.Rd
BootMRMR/man/pval.mbmr.Rd
BootMRMR/man/Weights.mrmr.Rd
BootMRMR/man/rice_salt.Rd
BootMRMR/man/pval.bmrmr.Rd
BootMRMR/man/bmrmr.pval.cutoff.Rd
BootMRMR/man/geneslect.f.Rd
BootMRMR/man/weight.mbmr.Rd
BootMRMR/man/bmrmr.weight.cutoff.Rd
BootMRMR/man/bootmr.weight.Rd
BootMRMR/man/topsis.meth.Rd
BootMRMR/man/mbmr.pval.cutoff.Rd
BootMRMR/man/mbmr.weight.cutoff.Rd