CADStat: Provides a GUI to Several Statistical Methods

Using JGR, provides a GUI to several statistical methods - scatterplot, boxplot, linear regression, generalized linear regression, quantile, regression, conditional probability calculations, and regression trees.

Author
Lester Yuan, Tom Stockton, Doug Bronson, Pasha Minallah, and Mark Fitzgerald
Date of publication
2016-10-31 23:33:57
Maintainer
Vlad Predovic <predovic.vladimir@epa.gov>
License
GPL (>= 2)
Version
3.0.6
URLs

View on CRAN

Man pages

bioinfer.JGR
Dialog box for predicting env. conditions from biological...
bioinfer.new.JGR
Dialog box for predicting env. conditions from biological...
browseHelp
Launches help in the browser
buildresultsXML
Prepare R output for XML presentation
bxplot.JGR
Dialog box for generating boxplots for data with factor...
CADStat.help
Launch browser help files for CADStat
CADStat.update
Update CADStat files
cleanCADStatWorkspace
Clean temporary files from CADStat workspace
conditionalprob.JGR
Dialog box for computing and plotting conditional...
condprob.fn
Working function to generate conditional probability values
condprob.impute
End function for conditional probability
cor.JGR
Dialog box for computing a correlation matrix
datamerge.JGR
Merge data dialog for JGR
docbook
General function for preparing output
docbook.data.frame
Prepare summary output from a data frame
docbook.default
General function for preparing output
docbook.glm
Prepare output from glm
docbook.glm.summary
Prepare summary output from glm
docbook.hmtestp
Prepare summary output from hmtest
docbook.htest
Prepare summary output from htest
docbook.lm
Prepare output from lm
docbook.lm.summary
Prepare summary output from lm
docbook.try
Try a docbook
envdata.OR
Environmental data from western OR
genResultSpace
Make new space for results
gisdt.subset
Subset data frame
glm.JGR
Dialog box for fitting a generalized linear regression model
glm.pred.JGR
Dialog box to apply predictions from a regression model to...
JGRMessageBox
Dialog box for predicting env. conditions from biological...
jgr.__removeMenu
Remove menus from JGR interface
load.class
Load a new java object
load.menus
Load new CADStat menus
localJGRError
Output error from JGR
pca.fa.JGR
Dialog box for calculating a principle component analysis
refids.OR
Reference site identifications western OR
resample
Resample for cond prob
rpart.JGR
Dialog box for classification and regression trees
rq.JGR
Dialog box for calculating a quantile regression
rq.plot.JGR
Plot quantile regression
scatterplot2
Draws a scatterplot based on GUI inputs
scatterplot2.JGR
Draws a scatterplot of bivariate data
setVisible
Make something visible
text.rpart.JGR
Add text to rpart plot

Files in this package

CADStat
CADStat/inst
CADStat/inst/java
CADStat/inst/java/cadstat.jar
CADStat/inst/menu
CADStat/inst/menu/menu.xml
CADStat/inst/doc
CADStat/inst/doc/boxplot.JGR.html
CADStat/inst/doc/glm.pred.JGR-img3.png
CADStat/inst/doc/bioinfer.JGR-img1.png
CADStat/inst/doc/loaddata-img6.png
CADStat/inst/doc/conditionalprob.JGR.html
CADStat/inst/doc/trait.stat.JGR.html
CADStat/inst/doc/rq.JGR-img3.png
CADStat/inst/doc/CADStat.JGR-img2.png
CADStat/inst/doc/glm.pred.JGR.html
CADStat/inst/doc/scatterplot.JGR-img2.png
CADStat/inst/doc/rpart.JGR-img2.png
CADStat/inst/doc/lm.JGR-img1.png
CADStat/inst/doc/bioinfer.JGR.html
CADStat/inst/doc/stylesheets
CADStat/inst/doc/stylesheets/caddis.xsl
CADStat/inst/doc/rpart.JGR-img1.png
CADStat/inst/doc/loaddata-img5.png
CADStat/inst/doc/glm.pred.JGR-img1.png
CADStat/inst/doc/cor.JGR-img3.png
CADStat/inst/doc/conditionalprob.JGR-img1.png
CADStat/inst/doc/scatterplot.JGR-img1.png
CADStat/inst/doc/loaddata-img3.png
CADStat/inst/doc/lm.JGR.html
CADStat/inst/doc/cor.JGR-img1.png
CADStat/inst/doc/pca.fa.JGR_html_7b2961fb.png
CADStat/inst/doc/trait.tool-img1.png
CADStat/inst/doc/glm.pred.JGR-img4.png
CADStat/inst/doc/taxonomic.correct.gif
CADStat/inst/doc/conf
CADStat/inst/doc/conf/cleanxhtml.xml
CADStat/inst/doc/conf/writer2xhtml.xml
CADStat/inst/doc/loaddata-img2.png
CADStat/inst/doc/pca.JGR-img1.png
CADStat/inst/doc/rq.JGR.html
CADStat/inst/doc/scatterplot.JGR-img3.png
CADStat/inst/doc/glm.pred.JGR-img2.png
CADStat/inst/doc/boxplot.JGR-img2.png
CADStat/inst/doc/rpart.JGR.html
CADStat/inst/doc/rpart.JGR-img3.png
CADStat/inst/doc/loaddata-img1.png
CADStat/inst/doc/rq.JGR-img1.png
CADStat/inst/doc/scatterplot.JGR.html
CADStat/inst/doc/lm.JGR-img2.png
CADStat/inst/doc/pca.fa.JGR_html_70837ecc.png
CADStat/inst/doc/CADStat.JGR-img1.png
CADStat/inst/doc/pca.fa.JGR_html_m5798ce7b.png
CADStat/inst/doc/conditionalprob.JGR-img3.png
CADStat/inst/doc/loaddata.html
CADStat/inst/doc/pics
CADStat/inst/doc/pics/glm.pred.JGR-img3.png
CADStat/inst/doc/pics/bioinfer.JGR-img1.png
CADStat/inst/doc/pics/loaddata-img6.png
CADStat/inst/doc/pics/rq.JGR-img3.png
CADStat/inst/doc/pics/CADStat.JGR-img2.png
CADStat/inst/doc/pics/scatterplot.JGR-img2.png
CADStat/inst/doc/pics/rpart.JGR-img2.png
CADStat/inst/doc/pics/lm.JGR-img1.png
CADStat/inst/doc/pics/rpart.JGR-img1.png
CADStat/inst/doc/pics/loaddata-img5.png
CADStat/inst/doc/pics/glm.pred.JGR-img1.png
CADStat/inst/doc/pics/cor.JGR-img3.png
CADStat/inst/doc/pics/conditionalprob.JGR-img1.png
CADStat/inst/doc/pics/scatterplot.JGR-img1.png
CADStat/inst/doc/pics/loaddata-img3.png
CADStat/inst/doc/pics/cor.JGR-img1.png
CADStat/inst/doc/pics/pca.fa.JGR_html_7b2961fb.png
CADStat/inst/doc/pics/trait.tool-img1.png
CADStat/inst/doc/pics/glm.pred.JGR-img4.png
CADStat/inst/doc/pics/taxonomic.correct.gif
CADStat/inst/doc/pics/loaddata-img2.png
CADStat/inst/doc/pics/pca.JGR-img1.png
CADStat/inst/doc/pics/scatterplot.JGR-img3.png
CADStat/inst/doc/pics/glm.pred.JGR-img2.png
CADStat/inst/doc/pics/boxplot.JGR-img2.png
CADStat/inst/doc/pics/rpart.JGR-img3.png
CADStat/inst/doc/pics/loaddata-img1.png
CADStat/inst/doc/pics/rq.JGR-img1.png
CADStat/inst/doc/pics/lm.JGR-img2.png
CADStat/inst/doc/pics/pca.fa.JGR_html_70837ecc.png
CADStat/inst/doc/pics/CADStat.JGR-img1.png
CADStat/inst/doc/pics/pca.fa.JGR_html_m5798ce7b.png
CADStat/inst/doc/pics/conditionalprob.JGR-img3.png
CADStat/inst/doc/pics/boxplot.JGR-img1.png
CADStat/inst/doc/pics/rq.JGR-img2.png
CADStat/inst/doc/pics/cor.JGR-img2.png
CADStat/inst/doc/pics/lm.JGR-img3.png
CADStat/inst/doc/pics/conditionalprob.JGR-img2.png
CADStat/inst/doc/pics/loaddata-img4.png
CADStat/inst/doc/boxplot.JGR-img1.png
CADStat/inst/doc/styles
CADStat/inst/doc/styles/caddis.css
CADStat/inst/doc/rq.JGR-img2.png
CADStat/inst/doc/cor.JGR-img2.png
CADStat/inst/doc/lm.JGR-img3.png
CADStat/inst/doc/pca.fa.JGR.html
CADStat/inst/doc/conditionalprob.JGR-img2.png
CADStat/inst/doc/CADStat.JGR.html
CADStat/inst/doc/cor.JGR.html
CADStat/inst/doc/loaddata-img4.png
CADStat/NAMESPACE
CADStat/NEWS
CADStat/data
CADStat/data/refids.or.txt
CADStat/data/envdata.or.txt
CADStat/R
CADStat/R/glm.JGR.R
CADStat/R/conditionalprob.JGR.R
CADStat/R/bioinfer.JGR.R
CADStat/R/datamerge.JGR.R
CADStat/R/CADStat.help.R
CADStat/R/buildresultsXML.R
CADStat/R/common.R
CADStat/R/glm.pred.JGR.R
CADStat/R/docbook.R
CADStat/R/pca.fa.JGR.R
CADStat/R/JGRMessageBox.r
CADStat/R/CADStat.update.R
CADStat/R/gisdt.subset.R
CADStat/R/bxplot.JGR.R
CADStat/R/scatterplot2.JGR.R
CADStat/R/scatterplot2.R
CADStat/R/cor.JGR.R
CADStat/R/rpart.JGR.R
CADStat/R/zzz.R
CADStat/R/rq.JGR.R
CADStat/README.md
CADStat/MD5
CADStat/java
CADStat/java/CADStat.java
CADStat/java/CADStat.java/ui
CADStat/java/CADStat.java/ui/FactorSubsetPane.form
CADStat/java/CADStat.java/ui/DataPlotDialog.java
CADStat/java/CADStat.java/ui/FactorSubsetPane.java
CADStat/java/CADStat.java/ui/DatasetPane.form
CADStat/java/CADStat.java/ui/DataPlotDialog.form
CADStat/java/CADStat.java/ui/DatasetPane.java
CADStat/java/CADStat.java/plots
CADStat/java/CADStat.java/plots/LinearRegression.java
CADStat/java/CADStat.java/plots/BiologicalInferencesTaxaNameMoreInfor.java
CADStat/java/CADStat.java/plots/TraitInferences.java
CADStat/java/CADStat.java/plots/LinearRegression.form
CADStat/java/CADStat.java/plots/ConditionalProbability.form
CADStat/java/CADStat.java/plots/QuantileRegression.java
CADStat/java/CADStat.java/plots/RegressionPrediction.form
CADStat/java/CADStat.java/plots/BxPlot.form
CADStat/java/CADStat.java/plots/DataMergeDialog.java
CADStat/java/CADStat.java/plots/ConditionalProbability.java
CADStat/java/CADStat.java/plots/TraitInferences.form
CADStat/java/CADStat.java/plots/FactorAnalysis.form
CADStat/java/CADStat.java/plots/TreeRegression.form
CADStat/java/CADStat.java/plots/BiologicalInferencesGeneralBox.java
CADStat/java/CADStat.java/plots/QuantileRegression.form
CADStat/java/CADStat.java/plots/ScatterPlot.java
CADStat/java/CADStat.java/plots/CorrelationAnalysis.form
CADStat/java/CADStat.java/plots/BiologicalInferences.form
CADStat/java/CADStat.java/plots/FactorAnalysis.java
CADStat/java/CADStat.java/plots/DataMergeDialog.form
CADStat/java/CADStat.java/plots/BiologicalInferencesTaxaNameUnrecog.java
CADStat/java/CADStat.java/plots/BiologicalInferences.java
CADStat/java/CADStat.java/plots/BxPlot.java
CADStat/java/CADStat.java/plots/ScatterPlot.form
CADStat/java/CADStat.java/plots/SpringUtilities.java
CADStat/java/CADStat.java/plots/RegressionPrediction.java
CADStat/java/CADStat.java/plots/BiologicalInferencesTaxaNameDupITIS.java
CADStat/java/CADStat.java/plots/CorrelationAnalysis.java
CADStat/java/CADStat.java/plots/TreeRegression.java
CADStat/java/CADStat.java/JGRCustomizer.java
CADStat/java/CADStat.java/prefs
CADStat/java/CADStat.java/prefs/PreferencesManager.java
CADStat/java/CADStat.java/prefs/PlotCharacter.java
CADStat/java/CADStat.java/prefs/DataPointColor.java
CADStat/java/CADStat.java/prefs/CadstatPreferences.java
CADStat/java/CADStat.java/prefs/PreferencesDialog.java
CADStat/java/CADStat.java/prefs/PreferencesDialog.form
CADStat/java/CADStat.java/utils
CADStat/java/CADStat.java/utils/GUIUtils.java
CADStat/java/CADStat.java/utils/RUtils.java
CADStat/DESCRIPTION
CADStat/man
CADStat/man/docbook.lm.Rd
CADStat/man/rq.plot.JGR.Rd
CADStat/man/glm.JGR.Rd
CADStat/man/scatterplot2.Rd
CADStat/man/glm.pred.JGR.Rd
CADStat/man/scatterplot2.JGR.Rd
CADStat/man/text.rpart.JGR.Rd
CADStat/man/setVisible.Rd
CADStat/man/CADStat.update.Rd
CADStat/man/genResultSpace.Rd
CADStat/man/docbook.Rd
CADStat/man/load.class.Rd
CADStat/man/refids.OR.Rd
CADStat/man/buildresultsXML.Rd
CADStat/man/bioinfer.JGR.Rd
CADStat/man/rq.JGR.Rd
CADStat/man/gisdt.subset.Rd
CADStat/man/load.menus.Rd
CADStat/man/CADStat.help.Rd
CADStat/man/datamerge.JGR.Rd
CADStat/man/rpart.JGR.Rd
CADStat/man/bxplot.JGR.Rd
CADStat/man/resample.Rd
CADStat/man/condprob.impute.Rd
CADStat/man/cleanCADStatWorkspace.Rd
CADStat/man/pca.fa.JGR.Rd
CADStat/man/docbook.glm.summary.Rd
CADStat/man/docbook.data.frame.Rd
CADStat/man/condprob.fn.Rd
CADStat/man/docbook.lm.summary.Rd
CADStat/man/docbook.hmtestp.Rd
CADStat/man/localJGRError.Rd
CADStat/man/conditionalprob.JGR.Rd
CADStat/man/docbook.glm.Rd
CADStat/man/bioinfer.new.JGR.Rd
CADStat/man/docbook.default.Rd
CADStat/man/JGRMessageBox.Rd
CADStat/man/jgr.__removeMenu.Rd
CADStat/man/envdata.OR.Rd
CADStat/man/docbook.htest.Rd
CADStat/man/docbook.try.Rd
CADStat/man/cor.JGR.Rd
CADStat/man/browseHelp.Rd