CADStat: Provides a GUI to Several Statistical Methods

Using JGR, provides a GUI to several statistical methods - scatterplot, boxplot, linear regression, generalized linear regression, quantile, regression, conditional probability calculations, and regression trees.

AuthorLester Yuan, Tom Stockton, Doug Bronson, Pasha Minallah, and Mark Fitzgerald
Date of publication2017-01-10 10:55:42
MaintainerVlad Predovic <predovic.vladimir@epa.gov>
LicenseGPL (>= 2)
Version3.0.6
http://www.rforge.net/CADStat/

View on CRAN

Man pages

bioinfer.JGR: Dialog box for predicting env. conditions from biological...

bioinfer.new.JGR: Dialog box for predicting env. conditions from biological...

browseHelp: Launches help in the browser

buildresultsXML: Prepare R output for XML presentation

bxplot.JGR: Dialog box for generating boxplots for data with factor...

CADStat.help: Launch browser help files for CADStat

CADStat.update: Update CADStat files

cleanCADStatWorkspace: Clean temporary files from CADStat workspace

conditionalprob.JGR: Dialog box for computing and plotting conditional...

condprob.fn: Working function to generate conditional probability values

condprob.impute: End function for conditional probability

cor.JGR: Dialog box for computing a correlation matrix

datamerge.JGR: Merge data dialog for JGR

docbook: General function for preparing output

docbook.data.frame: Prepare summary output from a data frame

docbook.default: General function for preparing output

docbook.glm: Prepare output from glm

docbook.glm.summary: Prepare summary output from glm

docbook.hmtestp: Prepare summary output from hmtest

docbook.htest: Prepare summary output from htest

docbook.lm: Prepare output from lm

docbook.lm.summary: Prepare summary output from lm

docbook.try: Try a docbook

envdata.OR: Environmental data from western OR

genResultSpace: Make new space for results

gisdt.subset: Subset data frame

glm.JGR: Dialog box for fitting a generalized linear regression model

glm.pred.JGR: Dialog box to apply predictions from a regression model to...

JGRMessageBox: Dialog box for predicting env. conditions from biological...

jgr.__removeMenu: Remove menus from JGR interface

load.class: Load a new java object

load.menus: Load new CADStat menus

localJGRError: Output error from JGR

pca.fa.JGR: Dialog box for calculating a principle component analysis

refids.OR: Reference site identifications western OR

resample: Resample for cond prob

rpart.JGR: Dialog box for classification and regression trees

rq.JGR: Dialog box for calculating a quantile regression

rq.plot.JGR: Plot quantile regression

scatterplot2: Draws a scatterplot based on GUI inputs

scatterplot2.JGR: Draws a scatterplot of bivariate data

setVisible: Make something visible

text.rpart.JGR: Add text to rpart plot

Files in this package

CADStat
CADStat/inst
CADStat/inst/java
CADStat/inst/java/cadstat.jar
CADStat/inst/menu
CADStat/inst/menu/menu.xml
CADStat/inst/doc
CADStat/inst/doc/boxplot.JGR.html
CADStat/inst/doc/glm.pred.JGR-img3.png
CADStat/inst/doc/bioinfer.JGR-img1.png
CADStat/inst/doc/loaddata-img6.png
CADStat/inst/doc/conditionalprob.JGR.html
CADStat/inst/doc/trait.stat.JGR.html
CADStat/inst/doc/rq.JGR-img3.png
CADStat/inst/doc/CADStat.JGR-img2.png
CADStat/inst/doc/glm.pred.JGR.html
CADStat/inst/doc/scatterplot.JGR-img2.png
CADStat/inst/doc/rpart.JGR-img2.png
CADStat/inst/doc/lm.JGR-img1.png
CADStat/inst/doc/bioinfer.JGR.html
CADStat/inst/doc/stylesheets
CADStat/inst/doc/stylesheets/caddis.xsl
CADStat/inst/doc/rpart.JGR-img1.png
CADStat/inst/doc/loaddata-img5.png
CADStat/inst/doc/glm.pred.JGR-img1.png
CADStat/inst/doc/cor.JGR-img3.png
CADStat/inst/doc/conditionalprob.JGR-img1.png
CADStat/inst/doc/scatterplot.JGR-img1.png
CADStat/inst/doc/loaddata-img3.png
CADStat/inst/doc/lm.JGR.html
CADStat/inst/doc/cor.JGR-img1.png
CADStat/inst/doc/pca.fa.JGR_html_7b2961fb.png
CADStat/inst/doc/trait.tool-img1.png
CADStat/inst/doc/glm.pred.JGR-img4.png
CADStat/inst/doc/taxonomic.correct.gif
CADStat/inst/doc/conf
CADStat/inst/doc/conf/cleanxhtml.xml
CADStat/inst/doc/conf/writer2xhtml.xml
CADStat/inst/doc/loaddata-img2.png
CADStat/inst/doc/pca.JGR-img1.png
CADStat/inst/doc/rq.JGR.html
CADStat/inst/doc/scatterplot.JGR-img3.png
CADStat/inst/doc/glm.pred.JGR-img2.png
CADStat/inst/doc/boxplot.JGR-img2.png
CADStat/inst/doc/rpart.JGR.html
CADStat/inst/doc/rpart.JGR-img3.png
CADStat/inst/doc/loaddata-img1.png
CADStat/inst/doc/rq.JGR-img1.png
CADStat/inst/doc/scatterplot.JGR.html
CADStat/inst/doc/lm.JGR-img2.png
CADStat/inst/doc/pca.fa.JGR_html_70837ecc.png
CADStat/inst/doc/CADStat.JGR-img1.png
CADStat/inst/doc/pca.fa.JGR_html_m5798ce7b.png
CADStat/inst/doc/conditionalprob.JGR-img3.png
CADStat/inst/doc/loaddata.html
CADStat/inst/doc/pics
CADStat/inst/doc/pics/glm.pred.JGR-img3.png
CADStat/inst/doc/pics/bioinfer.JGR-img1.png
CADStat/inst/doc/pics/loaddata-img6.png
CADStat/inst/doc/pics/rq.JGR-img3.png
CADStat/inst/doc/pics/CADStat.JGR-img2.png
CADStat/inst/doc/pics/scatterplot.JGR-img2.png
CADStat/inst/doc/pics/rpart.JGR-img2.png
CADStat/inst/doc/pics/lm.JGR-img1.png
CADStat/inst/doc/pics/rpart.JGR-img1.png
CADStat/inst/doc/pics/loaddata-img5.png
CADStat/inst/doc/pics/glm.pred.JGR-img1.png
CADStat/inst/doc/pics/cor.JGR-img3.png
CADStat/inst/doc/pics/conditionalprob.JGR-img1.png
CADStat/inst/doc/pics/scatterplot.JGR-img1.png
CADStat/inst/doc/pics/loaddata-img3.png
CADStat/inst/doc/pics/cor.JGR-img1.png
CADStat/inst/doc/pics/pca.fa.JGR_html_7b2961fb.png
CADStat/inst/doc/pics/trait.tool-img1.png
CADStat/inst/doc/pics/glm.pred.JGR-img4.png
CADStat/inst/doc/pics/taxonomic.correct.gif
CADStat/inst/doc/pics/loaddata-img2.png
CADStat/inst/doc/pics/pca.JGR-img1.png
CADStat/inst/doc/pics/scatterplot.JGR-img3.png
CADStat/inst/doc/pics/glm.pred.JGR-img2.png
CADStat/inst/doc/pics/boxplot.JGR-img2.png
CADStat/inst/doc/pics/rpart.JGR-img3.png
CADStat/inst/doc/pics/loaddata-img1.png
CADStat/inst/doc/pics/rq.JGR-img1.png
CADStat/inst/doc/pics/lm.JGR-img2.png
CADStat/inst/doc/pics/pca.fa.JGR_html_70837ecc.png
CADStat/inst/doc/pics/CADStat.JGR-img1.png
CADStat/inst/doc/pics/pca.fa.JGR_html_m5798ce7b.png
CADStat/inst/doc/pics/conditionalprob.JGR-img3.png
CADStat/inst/doc/pics/boxplot.JGR-img1.png
CADStat/inst/doc/pics/rq.JGR-img2.png
CADStat/inst/doc/pics/cor.JGR-img2.png
CADStat/inst/doc/pics/lm.JGR-img3.png
CADStat/inst/doc/pics/conditionalprob.JGR-img2.png
CADStat/inst/doc/pics/loaddata-img4.png
CADStat/inst/doc/boxplot.JGR-img1.png
CADStat/inst/doc/styles
CADStat/inst/doc/styles/caddis.css
CADStat/inst/doc/rq.JGR-img2.png
CADStat/inst/doc/cor.JGR-img2.png
CADStat/inst/doc/lm.JGR-img3.png
CADStat/inst/doc/pca.fa.JGR.html
CADStat/inst/doc/conditionalprob.JGR-img2.png
CADStat/inst/doc/CADStat.JGR.html
CADStat/inst/doc/cor.JGR.html
CADStat/inst/doc/loaddata-img4.png
CADStat/NAMESPACE
CADStat/NEWS
CADStat/data
CADStat/data/envdata.or.txt.gz
CADStat/data/refids.or.txt.gz
CADStat/R
CADStat/R/glm.JGR.R CADStat/R/conditionalprob.JGR.R CADStat/R/bioinfer.JGR.R CADStat/R/datamerge.JGR.R CADStat/R/CADStat.help.R CADStat/R/buildresultsXML.R CADStat/R/common.R CADStat/R/glm.pred.JGR.R CADStat/R/docbook.R CADStat/R/pca.fa.JGR.R
CADStat/R/JGRMessageBox.r
CADStat/R/CADStat.update.R CADStat/R/gisdt.subset.R CADStat/R/bxplot.JGR.R CADStat/R/scatterplot2.JGR.R CADStat/R/scatterplot2.R CADStat/R/cor.JGR.R CADStat/R/rpart.JGR.R CADStat/R/zzz.R CADStat/R/rq.JGR.R
CADStat/README.md
CADStat/MD5
CADStat/java
CADStat/java/CADStat.java
CADStat/java/CADStat.java/ui
CADStat/java/CADStat.java/ui/FactorSubsetPane.form
CADStat/java/CADStat.java/ui/DataPlotDialog.java
CADStat/java/CADStat.java/ui/FactorSubsetPane.java
CADStat/java/CADStat.java/ui/DatasetPane.form
CADStat/java/CADStat.java/ui/DataPlotDialog.form
CADStat/java/CADStat.java/ui/DatasetPane.java
CADStat/java/CADStat.java/plots
CADStat/java/CADStat.java/plots/LinearRegression.java
CADStat/java/CADStat.java/plots/BiologicalInferencesTaxaNameMoreInfor.java
CADStat/java/CADStat.java/plots/TraitInferences.java
CADStat/java/CADStat.java/plots/LinearRegression.form
CADStat/java/CADStat.java/plots/ConditionalProbability.form
CADStat/java/CADStat.java/plots/QuantileRegression.java
CADStat/java/CADStat.java/plots/RegressionPrediction.form
CADStat/java/CADStat.java/plots/BxPlot.form
CADStat/java/CADStat.java/plots/DataMergeDialog.java
CADStat/java/CADStat.java/plots/ConditionalProbability.java
CADStat/java/CADStat.java/plots/TraitInferences.form
CADStat/java/CADStat.java/plots/FactorAnalysis.form
CADStat/java/CADStat.java/plots/TreeRegression.form
CADStat/java/CADStat.java/plots/BiologicalInferencesGeneralBox.java
CADStat/java/CADStat.java/plots/QuantileRegression.form
CADStat/java/CADStat.java/plots/ScatterPlot.java
CADStat/java/CADStat.java/plots/CorrelationAnalysis.form
CADStat/java/CADStat.java/plots/BiologicalInferences.form
CADStat/java/CADStat.java/plots/FactorAnalysis.java
CADStat/java/CADStat.java/plots/DataMergeDialog.form
CADStat/java/CADStat.java/plots/BiologicalInferencesTaxaNameUnrecog.java
CADStat/java/CADStat.java/plots/BiologicalInferences.java
CADStat/java/CADStat.java/plots/BxPlot.java
CADStat/java/CADStat.java/plots/ScatterPlot.form
CADStat/java/CADStat.java/plots/SpringUtilities.java
CADStat/java/CADStat.java/plots/RegressionPrediction.java
CADStat/java/CADStat.java/plots/BiologicalInferencesTaxaNameDupITIS.java
CADStat/java/CADStat.java/plots/CorrelationAnalysis.java
CADStat/java/CADStat.java/plots/TreeRegression.java
CADStat/java/CADStat.java/JGRCustomizer.java
CADStat/java/CADStat.java/prefs
CADStat/java/CADStat.java/prefs/PreferencesManager.java
CADStat/java/CADStat.java/prefs/PlotCharacter.java
CADStat/java/CADStat.java/prefs/DataPointColor.java
CADStat/java/CADStat.java/prefs/CadstatPreferences.java
CADStat/java/CADStat.java/prefs/PreferencesDialog.java
CADStat/java/CADStat.java/prefs/PreferencesDialog.form
CADStat/java/CADStat.java/utils
CADStat/java/CADStat.java/utils/GUIUtils.java
CADStat/java/CADStat.java/utils/RUtils.java
CADStat/DESCRIPTION
CADStat/man
CADStat/man/docbook.lm.Rd CADStat/man/rq.plot.JGR.Rd CADStat/man/glm.JGR.Rd CADStat/man/scatterplot2.Rd CADStat/man/glm.pred.JGR.Rd CADStat/man/scatterplot2.JGR.Rd CADStat/man/text.rpart.JGR.Rd CADStat/man/setVisible.Rd CADStat/man/CADStat.update.Rd CADStat/man/genResultSpace.Rd CADStat/man/docbook.Rd CADStat/man/load.class.Rd CADStat/man/refids.OR.Rd CADStat/man/buildresultsXML.Rd CADStat/man/bioinfer.JGR.Rd CADStat/man/rq.JGR.Rd CADStat/man/gisdt.subset.Rd CADStat/man/load.menus.Rd CADStat/man/CADStat.help.Rd CADStat/man/datamerge.JGR.Rd CADStat/man/rpart.JGR.Rd CADStat/man/bxplot.JGR.Rd CADStat/man/resample.Rd CADStat/man/condprob.impute.Rd CADStat/man/cleanCADStatWorkspace.Rd CADStat/man/pca.fa.JGR.Rd CADStat/man/docbook.glm.summary.Rd CADStat/man/docbook.data.frame.Rd CADStat/man/condprob.fn.Rd CADStat/man/docbook.lm.summary.Rd CADStat/man/docbook.hmtestp.Rd CADStat/man/localJGRError.Rd CADStat/man/conditionalprob.JGR.Rd CADStat/man/docbook.glm.Rd CADStat/man/bioinfer.new.JGR.Rd CADStat/man/docbook.default.Rd CADStat/man/JGRMessageBox.Rd CADStat/man/jgr.__removeMenu.Rd CADStat/man/envdata.OR.Rd CADStat/man/docbook.htest.Rd CADStat/man/docbook.try.Rd CADStat/man/cor.JGR.Rd CADStat/man/browseHelp.Rd

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