CADStat: Provides a GUI to Several Statistical Methods
Version 3.0.8

Using Java GUI for R (JGR), CADStat provides a user interface for several statistical methods - scatterplot, boxplot, linear regression, generalized linear regression, quantile regression, conditional probability calculations, and regression trees.

Browse man pages Browse package API and functions Browse package files

AuthorLester Yuan, Tom Stockton, Doug Bronson, Pasha Minallah, and Mark Fitzgerald
Date of publication2017-05-10 02:09:22 UTC
MaintainerDavid Rebhuhn <rebhuhn.david@epa.gov>
LicenseGPL (>= 2)
Version3.0.8
URL http://www.rforge.net/CADStat/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("CADStat")

Man pages

bioinfer.JGR: Dialog box for predicting env. conditions from biological...
bioinfer.new.JGR: Dialog box for predicting env. conditions from biological...
browseHelp: Launches help in the browser
buildresultsXML: Prepare R output for XML presentation
bxplot.JGR: Dialog box for generating boxplots for data with factor...
CADStat.help: Launch browser help files for CADStat
CADStat.update: Update CADStat files
cleanCADStatWorkspace: Clean temporary files from CADStat workspace
conditionalprob.JGR: Dialog box for computing and plotting conditional...
condprob.fn: Working function to generate conditional probability values
condprob.impute: End function for conditional probability
cor.JGR: Dialog box for computing a correlation matrix
datamerge.JGR: Merge data dialog for JGR
docbook: General function for preparing output
docbook.data.frame: Prepare summary output from a data frame
docbook.default: General function for preparing output
docbook.glm: Prepare output from glm
docbook.glm.summary: Prepare summary output from glm
docbook.hmtestp: Prepare summary output from hmtest
docbook.htest: Prepare summary output from htest
docbook.lm: Prepare output from lm
docbook.lm.summary: Prepare summary output from lm
docbook.try: Try a docbook
envdata.OR: Environmental data from western OR
genResultSpace: Make new space for results
gisdt.subset: Subset data frame
glm.JGR: Dialog box for fitting a generalized linear regression model
glm.pred.JGR: Dialog box to apply predictions from a regression model to...
JGRMessageBox: Dialog box for predicting env. conditions from biological...
jgr.__removeMenu: Remove menus from JGR interface
load.class: Load a new java object
load.menus: Load new CADStat menus
localJGRError: Output error from JGR
pca.fa.JGR: Dialog box for calculating a principle component analysis
refids.OR: Reference site identifications western OR
resample: Resample for cond prob
rpart.JGR: Dialog box for classification and regression trees
rq.JGR: Dialog box for calculating a quantile regression
rq.plot.JGR: Plot quantile regression
scatterplot2: Draws a scatterplot based on GUI inputs
scatterplot2.JGR: Draws a scatterplot of bivariate data
setVisible: Make something visible
text.rpart.JGR: Add text to rpart plot

Functions

CADStat.help Man page Source code
CADStat.update Man page Source code
JGRMessageBox Man page
bioinfer.JGR Man page Source code
bioinfer.new.JGR Man page
browseHelp Man page Source code
buildresultsXML Man page Source code
bxplot.JGR Man page Source code
cleanCADStatWorkspace Man page Source code
conditionalprob.JGR Man page Source code
condprob.fn Man page Source code
condprob.impute Man page Source code
cor.JGR Man page Source code
datamerge.JGR Man page Source code
docbook Man page Source code
docbook.data.frame Man page Source code
docbook.default Man page Source code
docbook.glm Man page Source code
docbook.glm.summary Man page Source code
docbook.hmtestp Man page Source code
docbook.htest Man page Source code
docbook.lm Man page Source code
docbook.lm.summary Man page Source code
docbook.try Man page Source code
envdata.or Man page
genResultSpace Man page Source code
gisdt.subset Man page Source code
glm.JGR Source code
glm.JGR Man page
glm.pred.JGR Source code
glm.pred.JGR Man page
jgr.__removeMenu Man page Source code
load.class Man page Source code
load.menus Man page
localJGRError Man page Source code
onAttach Source code
onLoad Source code
pca.fa.JGR Man page Source code
refids.or Man page
resample Man page Source code
rpart.JGR Man page Source code
rq.JGR Man page Source code
rq.plot.JGR Man page Source code
scatterplot2 Man page Source code
scatterplot2.JGR Man page Source code
setVisible Man page Source code
text.rpart.JGR Man page Source code

Files

inst
inst/img
inst/img/glm.pred.JGR-img3.png
inst/img/bioinfer.JGR-img1.png
inst/img/loaddata-img6.png
inst/img/rq.JGR-img3.png
inst/img/CADStat.JGR-img2.png
inst/img/math
inst/img/math/stat-sig.gif
inst/img/math/X.gif
inst/img/math/stat.in.range.gif
inst/img/math/xnew.gif
inst/img/scatterplot.JGR-img2.png
inst/img/rpart.JGR-img2.png
inst/img/lm.JGR-img1.png
inst/img/rpart.JGR-img1.png
inst/img/loaddata-img5.png
inst/img/glm.pred.JGR-img1.png
inst/img/cor.JGR-img3.png
inst/img/conditionalprob.JGR-img1.png
inst/img/scatterplot.JGR-img1.png
inst/img/loaddata-img3-b.png
inst/img/loaddata-img3.png
inst/img/cor.JGR-img1.png
inst/img/pca.fa.JGR_html_7b2961fb.png
inst/img/trait.tool-img1.png
inst/img/glm.pred.JGR-img4.png
inst/img/taxonomic.correct.gif
inst/img/loaddata-img2.png
inst/img/pca.JGR-img1.png
inst/img/scatterplot.JGR-img3.png
inst/img/glm.pred.JGR-img2.png
inst/img/boxplot.JGR-img2.png
inst/img/rpart.JGR-img3.png
inst/img/loaddata-img1.png
inst/img/rq.JGR-img1.png
inst/img/lm.JGR-img2.png
inst/img/pca.fa.JGR_html_70837ecc.png
inst/img/CADStat.JGR-img1.png
inst/img/pca.fa.JGR_html_m5798ce7b.png
inst/img/conditionalprob.JGR-img3.png
inst/img/boxplot.JGR-img1.png
inst/img/rq.JGR-img2.png
inst/img/cor.JGR-img2.png
inst/img/lm.JGR-img3.png
inst/img/conditionalprob.JGR-img2.png
inst/img/loaddata-img4.png
inst/java
inst/java/cadstat.jar
inst/menu
inst/menu/menu.xml
inst/extdata
inst/extdata/refids.or.txt
inst/extdata/fish.lwr.txt
inst/extdata/eptpctfn.txt
inst/extdata/envdata.or.txt
inst/doc
inst/doc/boxplot.JGR.html
inst/doc/loaddata.JGR.html
inst/doc/conditionalprob.JGR.html
inst/doc/trait.stat.JGR.html
inst/doc/glm.pred.JGR.html
inst/doc/bioinfer.JGR.html
inst/doc/stylesheets
inst/doc/stylesheets/caddis.xsl
inst/doc/lm.JGR.html
inst/doc/conf
inst/doc/conf/cleanxhtml.xml
inst/doc/conf/writer2xhtml.xml
inst/doc/rq.JGR.html
inst/doc/rpart.JGR.html
inst/doc/scatterplot.JGR.html
inst/doc/styles
inst/doc/styles/caddis.css
inst/doc/pca.fa.JGR.html
inst/doc/CADStat.JGR.html
inst/doc/cor.JGR.html
inst/doc/datasets
inst/doc/datasets/envdata.or.htm
inst/doc/datasets/fish.lwr.htm
inst/doc/datasets/eptpctfn.htm
NAMESPACE
NEWS
R
R/glm.JGR.R
R/conditionalprob.JGR.R
R/bioinfer.JGR.R
R/datamerge.JGR.R
R/CADStat.help.R
R/buildresultsXML.R
R/common.R
R/glm.pred.JGR.R
R/docbook.R
R/pca.fa.JGR.R
R/JGRMessageBox.r
R/CADStat.update.R
R/gisdt.subset.R
R/bxplot.JGR.R
R/scatterplot2.JGR.R
R/scatterplot2.R
R/cor.JGR.R
R/rpart.JGR.R
R/zzz.R
R/rq.JGR.R
README.md
MD5
java
java/CADStat.java
java/CADStat.java/ui
java/CADStat.java/ui/FactorSubsetPane.form
java/CADStat.java/ui/DataPlotDialog.java
java/CADStat.java/ui/FactorSubsetPane.java
java/CADStat.java/ui/DatasetPane.form
java/CADStat.java/ui/DataPlotDialog.form
java/CADStat.java/ui/DatasetPane.java
java/CADStat.java/plots
java/CADStat.java/plots/LinearRegression.java
java/CADStat.java/plots/BiologicalInferencesTaxaNameMoreInfor.java
java/CADStat.java/plots/TraitInferences.java
java/CADStat.java/plots/LinearRegression.form
java/CADStat.java/plots/ConditionalProbability.form
java/CADStat.java/plots/QuantileRegression.java
java/CADStat.java/plots/RegressionPrediction.form
java/CADStat.java/plots/BxPlot.form
java/CADStat.java/plots/DataMergeDialog.java
java/CADStat.java/plots/SubsetFormatter.java
java/CADStat.java/plots/ConditionalProbability.java
java/CADStat.java/plots/TraitInferences.form
java/CADStat.java/plots/FactorAnalysis.form
java/CADStat.java/plots/TreeRegression.form
java/CADStat.java/plots/BiologicalInferencesGeneralBox.java
java/CADStat.java/plots/QuantileRegression.form
java/CADStat.java/plots/ScatterPlot.java
java/CADStat.java/plots/CorrelationAnalysis.form
java/CADStat.java/plots/BiologicalInferences.form
java/CADStat.java/plots/FactorAnalysis.java
java/CADStat.java/plots/DataMergeDialog.form
java/CADStat.java/plots/BiologicalInferencesTaxaNameUnrecog.java
java/CADStat.java/plots/BiologicalInferences.java
java/CADStat.java/plots/BxPlot.java
java/CADStat.java/plots/ScatterPlot.form
java/CADStat.java/plots/SpringUtilities.java
java/CADStat.java/plots/RegressionPrediction.java
java/CADStat.java/plots/BiologicalInferencesTaxaNameDupITIS.java
java/CADStat.java/plots/CorrelationAnalysis.java
java/CADStat.java/plots/TreeRegression.java
java/CADStat.java/JGRCustomizer.java
java/CADStat.java/prefs
java/CADStat.java/prefs/PreferencesManager.java
java/CADStat.java/prefs/PlotCharacter.java
java/CADStat.java/prefs/DataPointColor.java
java/CADStat.java/prefs/CadstatPreferences.java
java/CADStat.java/prefs/PreferencesDialog.java
java/CADStat.java/prefs/PreferencesDialog.form
java/CADStat.java/utils
java/CADStat.java/utils/GUIUtils.java
java/CADStat.java/utils/RUtils.java
DESCRIPTION
man
man/docbook.lm.Rd
man/rq.plot.JGR.Rd
man/glm.JGR.Rd
man/scatterplot2.Rd
man/glm.pred.JGR.Rd
man/scatterplot2.JGR.Rd
man/text.rpart.JGR.Rd
man/setVisible.Rd
man/CADStat.update.Rd
man/genResultSpace.Rd
man/docbook.Rd
man/load.class.Rd
man/refids.OR.Rd
man/buildresultsXML.Rd
man/bioinfer.JGR.Rd
man/rq.JGR.Rd
man/gisdt.subset.Rd
man/load.menus.Rd
man/CADStat.help.Rd
man/datamerge.JGR.Rd
man/rpart.JGR.Rd
man/bxplot.JGR.Rd
man/resample.Rd
man/condprob.impute.Rd
man/cleanCADStatWorkspace.Rd
man/pca.fa.JGR.Rd
man/docbook.glm.summary.Rd
man/docbook.data.frame.Rd
man/condprob.fn.Rd
man/docbook.lm.summary.Rd
man/docbook.hmtestp.Rd
man/localJGRError.Rd
man/conditionalprob.JGR.Rd
man/docbook.glm.Rd
man/bioinfer.new.JGR.Rd
man/docbook.default.Rd
man/JGRMessageBox.Rd
man/jgr.__removeMenu.Rd
man/envdata.OR.Rd
man/docbook.htest.Rd
man/docbook.try.Rd
man/cor.JGR.Rd
man/browseHelp.Rd
CADStat documentation built on May 19, 2017, 7:12 a.m.