CADStat: Provides a GUI to Several Statistical Methods

Using JGR, provides a GUI to several statistical methods - scatterplot, boxplot, linear regression, generalized linear regression, quantile, regression, conditional probability calculations, and regression trees.

AuthorLester Yuan, Tom Stockton, Doug Bronson, Pasha Minallah, and Mark Fitzgerald
Date of publication2017-01-10 10:55:42
MaintainerVlad Predovic <predovic.vladimir@epa.gov>
LicenseGPL (>= 2)
Version3.0.6
http://www.rforge.net/CADStat/

View on CRAN

Man pages

bioinfer.JGR: Dialog box for predicting env. conditions from biological...

bioinfer.new.JGR: Dialog box for predicting env. conditions from biological...

browseHelp: Launches help in the browser

buildresultsXML: Prepare R output for XML presentation

bxplot.JGR: Dialog box for generating boxplots for data with factor...

CADStat.help: Launch browser help files for CADStat

CADStat.update: Update CADStat files

cleanCADStatWorkspace: Clean temporary files from CADStat workspace

conditionalprob.JGR: Dialog box for computing and plotting conditional...

condprob.fn: Working function to generate conditional probability values

condprob.impute: End function for conditional probability

cor.JGR: Dialog box for computing a correlation matrix

datamerge.JGR: Merge data dialog for JGR

docbook: General function for preparing output

docbook.data.frame: Prepare summary output from a data frame

docbook.default: General function for preparing output

docbook.glm: Prepare output from glm

docbook.glm.summary: Prepare summary output from glm

docbook.hmtestp: Prepare summary output from hmtest

docbook.htest: Prepare summary output from htest

docbook.lm: Prepare output from lm

docbook.lm.summary: Prepare summary output from lm

docbook.try: Try a docbook

envdata.OR: Environmental data from western OR

genResultSpace: Make new space for results

gisdt.subset: Subset data frame

glm.JGR: Dialog box for fitting a generalized linear regression model

glm.pred.JGR: Dialog box to apply predictions from a regression model to...

JGRMessageBox: Dialog box for predicting env. conditions from biological...

jgr.__removeMenu: Remove menus from JGR interface

load.class: Load a new java object

load.menus: Load new CADStat menus

localJGRError: Output error from JGR

pca.fa.JGR: Dialog box for calculating a principle component analysis

refids.OR: Reference site identifications western OR

resample: Resample for cond prob

rpart.JGR: Dialog box for classification and regression trees

rq.JGR: Dialog box for calculating a quantile regression

rq.plot.JGR: Plot quantile regression

scatterplot2: Draws a scatterplot based on GUI inputs

scatterplot2.JGR: Draws a scatterplot of bivariate data

setVisible: Make something visible

text.rpart.JGR: Add text to rpart plot

Functions

bioinfer.JGR Man page
bioinfer.new.JGR Man page
browseHelp Man page
buildresultsXML Man page
bxplot.JGR Man page
CADStat.help Man page
CADStat.update Man page
cleanCADStatWorkspace Man page
conditionalprob.JGR Man page
condprob.fn Man page
condprob.impute Man page
cor.JGR Man page
datamerge.JGR Man page
docbook Man page
docbook.data.frame Man page
docbook.default Man page
docbook.glm Man page
docbook.glm.summary Man page
docbook.hmtestp Man page
docbook.htest Man page
docbook.lm Man page
docbook.lm.summary Man page
docbook.try Man page
envdata.or Man page
genResultSpace Man page
gisdt.subset Man page
glm.JGR Man page
glm.pred.JGR Man page
JGRMessageBox Man page
jgr.__removeMenu Man page
load.class Man page
load.menus Man page
localJGRError Man page
pca.fa.JGR Man page
refids.or Man page
resample Man page
rpart.JGR Man page
rq.JGR Man page
rq.plot.JGR Man page
scatterplot2 Man page
scatterplot2.JGR Man page
setVisible Man page
text.rpart.JGR Man page

Files

CADStat
CADStat/inst
CADStat/inst/java
CADStat/inst/java/cadstat.jar
CADStat/inst/menu
CADStat/inst/menu/menu.xml
CADStat/inst/doc
CADStat/inst/doc/boxplot.JGR.html
CADStat/inst/doc/glm.pred.JGR-img3.png
CADStat/inst/doc/bioinfer.JGR-img1.png
CADStat/inst/doc/loaddata-img6.png
CADStat/inst/doc/conditionalprob.JGR.html
CADStat/inst/doc/trait.stat.JGR.html
CADStat/inst/doc/rq.JGR-img3.png
CADStat/inst/doc/CADStat.JGR-img2.png
CADStat/inst/doc/glm.pred.JGR.html
CADStat/inst/doc/scatterplot.JGR-img2.png
CADStat/inst/doc/rpart.JGR-img2.png
CADStat/inst/doc/lm.JGR-img1.png
CADStat/inst/doc/bioinfer.JGR.html
CADStat/inst/doc/stylesheets
CADStat/inst/doc/stylesheets/caddis.xsl
CADStat/inst/doc/rpart.JGR-img1.png
CADStat/inst/doc/loaddata-img5.png
CADStat/inst/doc/glm.pred.JGR-img1.png
CADStat/inst/doc/cor.JGR-img3.png
CADStat/inst/doc/conditionalprob.JGR-img1.png
CADStat/inst/doc/scatterplot.JGR-img1.png
CADStat/inst/doc/loaddata-img3.png
CADStat/inst/doc/lm.JGR.html
CADStat/inst/doc/cor.JGR-img1.png
CADStat/inst/doc/pca.fa.JGR_html_7b2961fb.png
CADStat/inst/doc/trait.tool-img1.png
CADStat/inst/doc/glm.pred.JGR-img4.png
CADStat/inst/doc/taxonomic.correct.gif
CADStat/inst/doc/conf
CADStat/inst/doc/conf/cleanxhtml.xml
CADStat/inst/doc/conf/writer2xhtml.xml
CADStat/inst/doc/loaddata-img2.png
CADStat/inst/doc/pca.JGR-img1.png
CADStat/inst/doc/rq.JGR.html
CADStat/inst/doc/scatterplot.JGR-img3.png
CADStat/inst/doc/glm.pred.JGR-img2.png
CADStat/inst/doc/boxplot.JGR-img2.png
CADStat/inst/doc/rpart.JGR.html
CADStat/inst/doc/rpart.JGR-img3.png
CADStat/inst/doc/loaddata-img1.png
CADStat/inst/doc/rq.JGR-img1.png
CADStat/inst/doc/scatterplot.JGR.html
CADStat/inst/doc/lm.JGR-img2.png
CADStat/inst/doc/pca.fa.JGR_html_70837ecc.png
CADStat/inst/doc/CADStat.JGR-img1.png
CADStat/inst/doc/pca.fa.JGR_html_m5798ce7b.png
CADStat/inst/doc/conditionalprob.JGR-img3.png
CADStat/inst/doc/loaddata.html
CADStat/inst/doc/pics
CADStat/inst/doc/pics/glm.pred.JGR-img3.png
CADStat/inst/doc/pics/bioinfer.JGR-img1.png
CADStat/inst/doc/pics/loaddata-img6.png
CADStat/inst/doc/pics/rq.JGR-img3.png
CADStat/inst/doc/pics/CADStat.JGR-img2.png
CADStat/inst/doc/pics/scatterplot.JGR-img2.png
CADStat/inst/doc/pics/rpart.JGR-img2.png
CADStat/inst/doc/pics/lm.JGR-img1.png
CADStat/inst/doc/pics/rpart.JGR-img1.png
CADStat/inst/doc/pics/loaddata-img5.png
CADStat/inst/doc/pics/glm.pred.JGR-img1.png
CADStat/inst/doc/pics/cor.JGR-img3.png
CADStat/inst/doc/pics/conditionalprob.JGR-img1.png
CADStat/inst/doc/pics/scatterplot.JGR-img1.png
CADStat/inst/doc/pics/loaddata-img3.png
CADStat/inst/doc/pics/cor.JGR-img1.png
CADStat/inst/doc/pics/pca.fa.JGR_html_7b2961fb.png
CADStat/inst/doc/pics/trait.tool-img1.png
CADStat/inst/doc/pics/glm.pred.JGR-img4.png
CADStat/inst/doc/pics/taxonomic.correct.gif
CADStat/inst/doc/pics/loaddata-img2.png
CADStat/inst/doc/pics/pca.JGR-img1.png
CADStat/inst/doc/pics/scatterplot.JGR-img3.png
CADStat/inst/doc/pics/glm.pred.JGR-img2.png
CADStat/inst/doc/pics/boxplot.JGR-img2.png
CADStat/inst/doc/pics/rpart.JGR-img3.png
CADStat/inst/doc/pics/loaddata-img1.png
CADStat/inst/doc/pics/rq.JGR-img1.png
CADStat/inst/doc/pics/lm.JGR-img2.png
CADStat/inst/doc/pics/pca.fa.JGR_html_70837ecc.png
CADStat/inst/doc/pics/CADStat.JGR-img1.png
CADStat/inst/doc/pics/pca.fa.JGR_html_m5798ce7b.png
CADStat/inst/doc/pics/conditionalprob.JGR-img3.png
CADStat/inst/doc/pics/boxplot.JGR-img1.png
CADStat/inst/doc/pics/rq.JGR-img2.png
CADStat/inst/doc/pics/cor.JGR-img2.png
CADStat/inst/doc/pics/lm.JGR-img3.png
CADStat/inst/doc/pics/conditionalprob.JGR-img2.png
CADStat/inst/doc/pics/loaddata-img4.png
CADStat/inst/doc/boxplot.JGR-img1.png
CADStat/inst/doc/styles
CADStat/inst/doc/styles/caddis.css
CADStat/inst/doc/rq.JGR-img2.png
CADStat/inst/doc/cor.JGR-img2.png
CADStat/inst/doc/lm.JGR-img3.png
CADStat/inst/doc/pca.fa.JGR.html
CADStat/inst/doc/conditionalprob.JGR-img2.png
CADStat/inst/doc/CADStat.JGR.html
CADStat/inst/doc/cor.JGR.html
CADStat/inst/doc/loaddata-img4.png
CADStat/NAMESPACE
CADStat/NEWS
CADStat/data
CADStat/data/envdata.or.txt.gz
CADStat/data/refids.or.txt.gz
CADStat/R
CADStat/R/glm.JGR.R CADStat/R/conditionalprob.JGR.R CADStat/R/bioinfer.JGR.R CADStat/R/datamerge.JGR.R CADStat/R/CADStat.help.R CADStat/R/buildresultsXML.R CADStat/R/common.R CADStat/R/glm.pred.JGR.R CADStat/R/docbook.R CADStat/R/pca.fa.JGR.R
CADStat/R/JGRMessageBox.r
CADStat/R/CADStat.update.R CADStat/R/gisdt.subset.R CADStat/R/bxplot.JGR.R CADStat/R/scatterplot2.JGR.R CADStat/R/scatterplot2.R CADStat/R/cor.JGR.R CADStat/R/rpart.JGR.R CADStat/R/zzz.R CADStat/R/rq.JGR.R
CADStat/README.md
CADStat/MD5
CADStat/java
CADStat/java/CADStat.java
CADStat/java/CADStat.java/ui
CADStat/java/CADStat.java/ui/FactorSubsetPane.form
CADStat/java/CADStat.java/ui/DataPlotDialog.java
CADStat/java/CADStat.java/ui/FactorSubsetPane.java
CADStat/java/CADStat.java/ui/DatasetPane.form
CADStat/java/CADStat.java/ui/DataPlotDialog.form
CADStat/java/CADStat.java/ui/DatasetPane.java
CADStat/java/CADStat.java/plots
CADStat/java/CADStat.java/plots/LinearRegression.java
CADStat/java/CADStat.java/plots/BiologicalInferencesTaxaNameMoreInfor.java
CADStat/java/CADStat.java/plots/TraitInferences.java
CADStat/java/CADStat.java/plots/LinearRegression.form
CADStat/java/CADStat.java/plots/ConditionalProbability.form
CADStat/java/CADStat.java/plots/QuantileRegression.java
CADStat/java/CADStat.java/plots/RegressionPrediction.form
CADStat/java/CADStat.java/plots/BxPlot.form
CADStat/java/CADStat.java/plots/DataMergeDialog.java
CADStat/java/CADStat.java/plots/ConditionalProbability.java
CADStat/java/CADStat.java/plots/TraitInferences.form
CADStat/java/CADStat.java/plots/FactorAnalysis.form
CADStat/java/CADStat.java/plots/TreeRegression.form
CADStat/java/CADStat.java/plots/BiologicalInferencesGeneralBox.java
CADStat/java/CADStat.java/plots/QuantileRegression.form
CADStat/java/CADStat.java/plots/ScatterPlot.java
CADStat/java/CADStat.java/plots/CorrelationAnalysis.form
CADStat/java/CADStat.java/plots/BiologicalInferences.form
CADStat/java/CADStat.java/plots/FactorAnalysis.java
CADStat/java/CADStat.java/plots/DataMergeDialog.form
CADStat/java/CADStat.java/plots/BiologicalInferencesTaxaNameUnrecog.java
CADStat/java/CADStat.java/plots/BiologicalInferences.java
CADStat/java/CADStat.java/plots/BxPlot.java
CADStat/java/CADStat.java/plots/ScatterPlot.form
CADStat/java/CADStat.java/plots/SpringUtilities.java
CADStat/java/CADStat.java/plots/RegressionPrediction.java
CADStat/java/CADStat.java/plots/BiologicalInferencesTaxaNameDupITIS.java
CADStat/java/CADStat.java/plots/CorrelationAnalysis.java
CADStat/java/CADStat.java/plots/TreeRegression.java
CADStat/java/CADStat.java/JGRCustomizer.java
CADStat/java/CADStat.java/prefs
CADStat/java/CADStat.java/prefs/PreferencesManager.java
CADStat/java/CADStat.java/prefs/PlotCharacter.java
CADStat/java/CADStat.java/prefs/DataPointColor.java
CADStat/java/CADStat.java/prefs/CadstatPreferences.java
CADStat/java/CADStat.java/prefs/PreferencesDialog.java
CADStat/java/CADStat.java/prefs/PreferencesDialog.form
CADStat/java/CADStat.java/utils
CADStat/java/CADStat.java/utils/GUIUtils.java
CADStat/java/CADStat.java/utils/RUtils.java
CADStat/DESCRIPTION
CADStat/man
CADStat/man/docbook.lm.Rd CADStat/man/rq.plot.JGR.Rd CADStat/man/glm.JGR.Rd CADStat/man/scatterplot2.Rd CADStat/man/glm.pred.JGR.Rd CADStat/man/scatterplot2.JGR.Rd CADStat/man/text.rpart.JGR.Rd CADStat/man/setVisible.Rd CADStat/man/CADStat.update.Rd CADStat/man/genResultSpace.Rd CADStat/man/docbook.Rd CADStat/man/load.class.Rd CADStat/man/refids.OR.Rd CADStat/man/buildresultsXML.Rd CADStat/man/bioinfer.JGR.Rd CADStat/man/rq.JGR.Rd CADStat/man/gisdt.subset.Rd CADStat/man/load.menus.Rd CADStat/man/CADStat.help.Rd CADStat/man/datamerge.JGR.Rd CADStat/man/rpart.JGR.Rd CADStat/man/bxplot.JGR.Rd CADStat/man/resample.Rd CADStat/man/condprob.impute.Rd CADStat/man/cleanCADStatWorkspace.Rd CADStat/man/pca.fa.JGR.Rd CADStat/man/docbook.glm.summary.Rd CADStat/man/docbook.data.frame.Rd CADStat/man/condprob.fn.Rd CADStat/man/docbook.lm.summary.Rd CADStat/man/docbook.hmtestp.Rd CADStat/man/localJGRError.Rd CADStat/man/conditionalprob.JGR.Rd CADStat/man/docbook.glm.Rd CADStat/man/bioinfer.new.JGR.Rd CADStat/man/docbook.default.Rd CADStat/man/JGRMessageBox.Rd CADStat/man/jgr.__removeMenu.Rd CADStat/man/envdata.OR.Rd CADStat/man/docbook.htest.Rd CADStat/man/docbook.try.Rd CADStat/man/cor.JGR.Rd CADStat/man/browseHelp.Rd

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