API for CAESAR.Suite
CAESAR: a Cross-Technology and Cross-Resolution Framework for Spatial Omics Annotation
| Global functions | |
|---|---|
| .logDiffTime | Source code |
| CAESAR.CTDEP | Man page Source code |
| CAESAR.RUV | Man page Source code |
| CAESAR.annotation | Man page Source code |
| CAESAR.coembedding | Man page Source code |
| CAESAR.coembedding.image | Man page Source code |
| CAESAR.enrich.pathway | Man page Source code |
| CAESAR.enrich.score | Man page Source code |
| Cauchy.Combination | Man page Source code |
| CoUMAP | Man page Source code |
| CoUMAP.plot | Man page Source code |
| Human_HK_genes | Man page |
| Intsg | Man page Source code |
| Mouse_HK_genes | Man page |
| SigScore | Man page Source code |
| acc | Man page Source code |
| add.gene.embedding | Man page Source code |
| annotation_mat | Man page Source code |
| approxPhi_imFactorCpp | Source code |
| asy_gen | Source code |
| asy_max | Source code |
| asy_wei | Source code |
| auc | Man page Source code |
| cellembedding_image_matrix | Man page Source code |
| cellembedding_image_seurat | Man page Source code |
| cellembedding_matrix | Man page Source code |
| cellembedding_seurat | Man page Source code |
| dfList2df | Source code |
| fast.permu_edge | Source code |
| fast.permu_gen | Source code |
| fast.permu_max | Source code |
| fast.permu_wei | Source code |
| fast.rg.test.full | Source code |
| fast_theo_mu_sig | Source code |
| fast_weighted_R1R2 | Source code |
| find.sig.genes | Man page Source code |
| firstup | Source code |
| gene_embed_cpp | Source code |
| gene_embed_weight_cpp | Source code |
| get_correct_exp | Source code |
| get_indexList | Source code |
| get_sampleID | Source code |
| get_varfeature_fromSeurat | Source code |
| getneighbor_weightmat | Source code |
| getneighborhood_fastcpp | Man page Source code |
| imFactorCpp | Source code |
| is_interactive | Source code |
| kmst | Source code |
| marker.select | Man page Source code |
| markerList2mat | Man page Source code |
| mat2list | Source code |
| matlist2mat | Source code |
| pathway.rgTest | Source code |
| pdistance.matrix | Source code |
| pdistance_cpp | Source code |
| scaleMatrix_byrow | Source code |
| searchRadius | Source code |
| toydata | Man page |
| vec2list | Source code |
| weightAdj | Source code |
| wpca | Source code |
| wpcaCpp | Source code |
