updateScoreMat: auxiliary file for CAM: Updates the score matrix after having...

In CAM: Causal Additive Model (CAM)

Description

auxiliary file for CAM. Updates the score matrix after having added edge i -> j to the graph.

Usage

updateScoreMat(scoreMat, X, scoreName, i, j, scoreNodes, Adj, output, numCores, 
               maxNumParents, parsScore, intervMat, intervData)

Arguments

scoreMat	the current score matrix that has to be updated
X	nxp matrix of training inputs (n data points, p dimensions)
scoreName	specifies the model type which is used to compute the score. Default is "SEMGAM" which assumes a generalized additive model class. Other options include "SEMLIN" which fits a linear model.
i	starting point of the edge i->j that has been added
j	end point of the edge i->j that has been added
scoreNodes	vector containing current scores of each node
Adj	adjacency matrix of the graph
output	boolean indicating whether information about the progress is written to the console.
numCores	specifies the number of cores that can be used for computation.
maxNumParents	specifies the maximal number of parents that are allowed in the model.
parsScore	additional parameters can be supported to the score function.
intervMat	the matrix intervMat has the same dimension as X. entry (i,j) == TRUE indicates that in experiment i, variable j has been intervened on.
intervData	boolean that indicates whether we use interventional data.

Value

scoreMat

the updated score matrix.

Note

This is an auxiliary file for CAM.

Author(s)

J. Peters ([e-mail]) and J. Ernest ([e-mail])

References

P. B\"uhlmann, J. Peters, J. Ernest: CAM: Causal Additive Models, high-dimensional Order Search and Penalized Regression Annals of Statistics 42:2526-2556, 2014.

See Also

CAM

CAM documentation built on May 2, 2019, 8:24 a.m.