CARBayes: Spatial Generalised Linear Mixed Models for Areal Unit Data

Implements a class of univariate and multivariate spatial generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (McMC) simulation. The response variable can be binomial, Gaussian or Poisson. Spatial autocorrelation is modelled by a set of random effects, which are assigned a conditional autoregressive (CAR) prior distribution. A number of different CAR priors are available for the random effects, including a multivariate CAR (MCAR) model for multivariate spatial data. Full details are given in the vignette accompanying this package. The initial creation of this package was supported by the Economic and Social Research Council (ESRC) grant RES-000-22-4256, and on-going development was supported by the Engineering and Physical Science Research Council (EPSRC) grant EP/J017442/1.

Author
Duncan Lee
Date of publication
2016-06-08 15:40:24
Maintainer
Duncan Lee <Duncan.Lee@glasgow.ac.uk>
License
GPL (>= 2)
Version
4.6

View on CRAN

Man pages

CARBayes-package
Spatial Generalised Linear Mixed Models for Areal Unit Data
combine.data.shapefile
Combines a data frame with a shapefile to create a...
highlight.borders
Creates a SpatialPoints object identifying a subset of...
MVS.CARleroux
Fit a multivariate spatial generalised linear mixed model to...
print.carbayes
Print a summary of a fitted carbayes model to the screen.
S.CARbym
Fit a spatial generalised linear mixed model to data, where...
S.CARdissimilarity
Fit a spatial generalised linear mixed model to data, where...
S.CARleroux
Fit a spatial generalised linear mixed model to data, where...
S.CARlocalised
Fit a spatial generalised linear mixed model to data, where a...
summarise.lincomb
Compute the posterior distribution for a linear combination...
summarise.samples
Summarise a matrix of Markov chain Monte Carlo samples.

Files in this package

CARBayes
CARBayes/inst
CARBayes/inst/doc
CARBayes/inst/doc/CARBayesvignette.R
CARBayes/inst/doc/CARBayesvignette.pdf
CARBayes/inst/doc/CARBayesvignette.Rnw
CARBayes/src
CARBayes/src/RcppExports.cpp
CARBayes/src/CARBayes.cpp
CARBayes/NAMESPACE
CARBayes/R
CARBayes/R/poisson.dissimilarityCAR.R
CARBayes/R/poisson.bymCAR.R
CARBayes/R/poisson.localisedCAR.R
CARBayes/R/highlight.borders.R
CARBayes/R/poisson.MVlerouxCAR.R
CARBayes/R/combine.data.shapefile.R
CARBayes/R/S.CARbym.R
CARBayes/R/binomial.dissimilarityCAR.R
CARBayes/R/S.CARdissimilarity.R
CARBayes/R/summarise.samples.R
CARBayes/R/S.CARleroux.R
CARBayes/R/binomial.bymCAR.R
CARBayes/R/binomial.MVlerouxCAR.R
CARBayes/R/RcppExports.R
CARBayes/R/gaussian.dissimilarityCAR.R
CARBayes/R/binomial.lerouxCAR.R
CARBayes/R/S.CARlocalised.R
CARBayes/R/binomial.localisedCAR.R
CARBayes/R/print.carbayes.R
CARBayes/R/poisson.lerouxCAR.R
CARBayes/R/MVS.CARleroux.R
CARBayes/R/summarise.lincomb.R
CARBayes/R/gaussian.lerouxCAR.R
CARBayes/vignettes
CARBayes/vignettes/CARBayesvignette-015.pdf
CARBayes/vignettes/pricemap.png
CARBayes/vignettes/crimeplot.png
CARBayes/vignettes/CARBayesvignette-016.pdf
CARBayes/vignettes/CARBayesvignette-014.pdf
CARBayes/vignettes/CARBayesvignette-017.pdf
CARBayes/vignettes/CARBayesvignette-008.pdf
CARBayes/vignettes/CARBayesvignette-018.pdf
CARBayes/vignettes/smrmap.png
CARBayes/vignettes/CARBayesvignette-006.pdf
CARBayes/vignettes/CARBayesvignette-019.pdf
CARBayes/vignettes/boundarymap.png
CARBayes/vignettes/CARBayesvignette-007.pdf
CARBayes/vignettes/jss996.bib
CARBayes/vignettes/CARBayesvignette.Rnw
CARBayes/MD5
CARBayes/build
CARBayes/build/vignette.rds
CARBayes/DESCRIPTION
CARBayes/man
CARBayes/man/summarise.lincomb.Rd
CARBayes/man/S.CARleroux.Rd
CARBayes/man/summarise.samples.Rd
CARBayes/man/combine.data.shapefile.Rd
CARBayes/man/S.CARbym.Rd
CARBayes/man/CARBayes-package.Rd
CARBayes/man/highlight.borders.Rd
CARBayes/man/S.CARlocalised.Rd
CARBayes/man/MVS.CARleroux.Rd
CARBayes/man/S.CARdissimilarity.Rd
CARBayes/man/print.carbayes.Rd