CARBayesST: Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data
Version 2.5

Implements a class of spatio-temporal generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (MCMC) simulation. The response variable can be binomial, Gaussian or Poisson, but for some models only the binomial and Poisson data likelihoods are available. The spatio-temporal autocorrelation is modelled by random effects, which are assigned conditional autoregressive (CAR) style prior distributions. A number of different random effects structures are available, and full details are given in the vignette accompanying this package and the references in the help files. The creation of this package was supported by the Engineering and Physical Sciences Research Council (EPSRC) grant EP/J017442/1 and the Medical Research Council (MRC) grant MR/L022184/1.

AuthorDuncan Lee, Alastair Rushworth and Gary Napier
Date of publication2017-03-16 12:26:02
MaintainerDuncan Lee <Duncan.Lee@glasgow.ac.uk>
LicenseGPL (>= 2)
Version2.5
URL http://github.com/duncanplee/CARBayesST
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("CARBayesST")

Getting started

Package overview

Popular man pages

CARBayesST-package: Spatio-Temporal Generalised Linear Mixed Models For Areal...
coef.CARBayesST: Extract the regression coefficients from a model.
fitted.CARBayesST: Extract the fitted values from a model.
logLik.CARBayesST: Extract the estimated loglikelihood from a fitted model.
model.matrix.CARBayesST: Extract the Model (design) matrix from a model.
residuals.CARBayesST: Extract the residuals from a model.
ST.CARsepspatial: Fit a spatio-temporal generalised linear mixed model to data,...
See all...

All man pages Function index File listing

Man pages

CARBayesST-package: Spatio-Temporal Generalised Linear Mixed Models For Areal...
coef.CARBayesST: Extract the regression coefficients from a model.
fitted.CARBayesST: Extract the fitted values from a model.
logLik.CARBayesST: Extract the estimated loglikelihood from a fitted model.
model.matrix.CARBayesST: Extract the Model (design) matrix from a model.
print.CARBayesST: Print a summary of the fitted model to the screen.
residuals.CARBayesST: Extract the residuals from a model.
ST.CARadaptive: Fit a spatio-temporal generalised linear mixed model to data...
ST.CARanova: Fit a spatio-temporal generalised linear mixed model to data,...
ST.CARar: Fit a spatio-temporal generalised linear mixed model to data,...
ST.CARlinear: Fit a spatio-temporal generalised linear mixed model to data,...
ST.CARlocalised: Fit a spatio-temporal generalised linear mixed model to data,...
ST.CARsepspatial: Fit a spatio-temporal generalised linear mixed model to data,...

Functions

CARBayesST Man page
CARBayesST-package Man page
SPTICARphiBinomial Source code
SPTICARphiBinomialMALA Source code
SPTICARphiGaussian Source code
SPTICARphiVarb Source code
SPTICARphiVarbMALA Source code
ST.CARadaptive Man page Source code
ST.CARanova Man page Source code
ST.CARar Man page Source code
ST.CARlinear Man page Source code
ST.CARlocalised Man page Source code
ST.CARsepspatial Man page Source code
Zupdatesqbin Source code
Zupdatesqgau Source code
Zupdatesqpoi Source code
binomial.CARadaptive Source code
binomial.CARanova Source code
binomial.CARar Source code
binomial.CARlinear Source code
binomial.CARlocalised Source code
binomial.CARsepspatial Source code
binomialarcarupdateMALA Source code
binomialarcarupdateRW Source code
binomialbetaupdateMALA Source code
binomialbetaupdateRW Source code
binomialcarupdateMALA Source code
binomialcarupdateRW Source code
binomialindepupdateMALA Source code
binomialindepupdateRW Source code
binomialsrecarupdateMALA Source code
binomialsrecarupdateRW Source code
coef.CARBayesST Man page Source code
common.Wcheckformat.leroux Source code
common.accceptrates1 Source code
common.accceptrates2 Source code
common.betablock Source code
common.betatransform Source code
common.burnin.nsample.thin.check Source code
common.frame Source code
common.frame.localised Source code
common.verbose Source code
fitted.CARBayesST Man page Source code
gammaquadformcompute Source code
gaussian.CARadaptive Source code
gaussian.CARanova Source code
gaussian.CARar Source code
gaussian.CARlinear Source code
gaussianarcarupdate Source code
gaussiancarupdate Source code
linpredcompute Source code
logLik.CARBayesST Man page Source code
model.matrix.CARBayesST Man page Source code
poisson.CARadaptive Source code
poisson.CARanova Source code
poisson.CARar Source code
poisson.CARlinear Source code
poisson.CARlocalised Source code
poisson.CARsepspatial Source code
poissonarcarupdateMALA Source code
poissonarcarupdateRW Source code
poissonbetaupdateMALA Source code
poissonbetaupdateRW Source code
poissoncarupdateMALA Source code
poissoncarupdateRW Source code
poissonindepupdateMALA Source code
poissonindepupdateRW Source code
poissonsrecarupdateMALA Source code
poissonsrecarupdateRW Source code
print.CARBayesST Man page Source code
prior.beta.check Source code
prior.var.check Source code
qform Source code
qformSPACETIME Source code
qform_ST Source code
qform_ST_asym Source code
qform_asym Source code
qform_difference_ST Source code
quadform Source code
residuals.CARBayesST Man page Source code
rhoquadformcompute Source code
tau2compute Source code
tauquadformcompute Source code
tauquadformcompute2 Source code
update_Qtime Source code
updatetripList2 Source code
updatetriplets_rho Source code

Files

inst
inst/doc
inst/doc/CARBayesST.Rnw
inst/doc/CARBayesST.R
inst/doc/CARBayesST.pdf
tests
tests/testthat.R
tests/testthat
tests/testthat/test-binomial.R
tests/testthat/test-gaussian.R
tests/testthat/test-poisson.R
src
src/registerDynamicSymbol.c
src/RcppExports.cpp
src/CARBayesST.cpp
NAMESPACE
R
R/ST.CARlocalised.R
R/binomial.CARanova.R
R/ST.CARadaptive.R
R/poisson.CARanova.R
R/poisson.CARar.R
R/ST.CARanova.R
R/logLik.CARBayesST.R
R/gaussian.CARanova.R
R/poisson.CARsepspatial.R
R/fitted.CARBayesST.R
R/print.CARBayesST.R
R/gaussian.CARar.R
R/ST.CARar.R
R/binomial.CARlinear.R
R/poisson.CARlocalised.R
R/RcppExports.R
R/poisson.CARadaptive.R
R/residuals.CARBayesST.R
R/ST.CARlinear.R
R/gaussian.CARlinear.R
R/binomial.CARsepspatial.R
R/coef.CARBayesST.R
R/common.functions.R
R/binomial.CARar.R
R/poisson.CARlinear.R
R/gaussian.CARadaptive.R
R/ST.CARsepspatial.R
R/binomial.CARadaptive.R
R/binomial.CARlocalised.R
R/model.matrix.CARBayesST.R
vignettes
vignettes/salesmap.png
vignettes/pollution_mcmc.png
vignettes/Chicago.bst
vignettes/CARBayesST.Rnw
vignettes/figsim1.png
vignettes/salesboxplot.png
vignettes/SMRmap.png
vignettes/jss.dtx
vignettes/natbib.sty
vignettes/jsslogo.jpg
vignettes/salesmapest.png
vignettes/salestrend.png
vignettes/pollutionscatterplot.png
vignettes/CARBayesST.bib
MD5
build
build/vignette.rds
DESCRIPTION
man
man/ST.CARsepspatial.Rd
man/print.CARBayesST.Rd
man/logLik.CARBayesST.Rd
man/ST.CARlocalised.Rd
man/ST.CARadaptive.Rd
man/fitted.CARBayesST.Rd
man/ST.CARanova.Rd
man/model.matrix.CARBayesST.Rd
man/ST.CARlinear.Rd
man/coef.CARBayesST.Rd
man/ST.CARar.Rd
man/CARBayesST-package.Rd
man/residuals.CARBayesST.Rd
CARBayesST documentation built on May 19, 2017, 7:05 p.m.

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