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CBASSED50: Process CBASS-Derived PAM Data
Tools to process CBASS-derived PAM data efficiently. Minimal requirements are PAM-based photosynthetic efficiency data (or data from any other continuous variable that changes with temperature, e.g. relative bleaching scores) from 4 coral samples (nubbins) subjected to 4 temperature profiles of at least 2 colonies from 1 coral species from 1 site. Please refer to the following CBASS (Coral Bleaching Automated Stress System) papers for in-depth information regarding CBASS acute thermal stress assays, experimental design considerations, and ED5/ED50/ED95 thermal parameters: Nicolas R. Evensen et al. (2023) <doi:10.1002/lom3.10555> Christian R. Voolstra et al. (2020) <doi:10.1111/gcb.15148> Christian R. Voolstra et al. (2025) <doi:10.1146/annurev-marine-032223-024511>.
Getting started
Browse package contents
Package details |
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| Author | Yulia Iakovleva [aut] (ORCID: <https://orcid.org/0000-0002-0202-7245>), Luigi Colin [aut, cre] (ORCID: <https://orcid.org/0000-0002-6966-2817>), Christian Robert Voolstra [aut] (ORCID: <https://orcid.org/0000-0003-4555-3795>) |
| Maintainer | Luigi Colin <reefgenomics@gmail.com> |
| License | MIT + file LICENSE |
| Version | 0.2.0 |
| Package repository | View on CRAN |
| Installation |
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