NEWS.md

In CDMConnector: Connect to an OMOP Common Data Model

CDMConnector 2.0

• Remove snake case functions in favor of only camel case style
• Remove cohort table manipulation functions
• Add row to cohort attrition table that accounts for record collapsing cohort eras step in Atlas/Circe cohort generation
• Increase test coverage
• Fix bugs with cdmFlatten
• Add support for snowflake with DatabaseConnector driver

CDMConnector 1.7.0

• Add support for Big Query using bigrquery DBI package (pending PRs on omopgenerics and bigrquery) @IoannaNika
• Add support for the DatabaseConnector postgresql JDBC driver @ablack3
• By default automatically detect CDM version @catalamarti
• Deprecate snake case functions @IoannaNika
• Deprecate cohort manipulation functions @ablack3
• Deprecate validation functions @ablack3

CDMConnector 1.6.1

• use BIGINT for subject_id column of cohort tables

CDMConnector 1.6.0

• fix bug in copyCdmTo where attribute tables were not being copied #231 @catalamarti
• check that overwrite argument works in compute when using temp tables #222 @ablack3
• added synpuf1k with Achilles tables to example datasets #230 @ablack3
• add requireEunomia function #481 @catalamarti

CDMConnector 1.5.0

• Get all tests passing on Databricks/Spark using odbc driver
• Emulate temporary tables on Databricks/Spark when compute is called with temporary = TRUE
• soft deprecate asDate in favor of as.Date
• soft deprecate assertWriteSchema since cdm object are now required to always have a write schema
• remove support for Capr cohort objects in generate_cohort_set to pass CRAN checks

CDMConnector 1.4.0

• fix issue on cran server
• new omopgenerics methods

CDMConnector 1.3.1

• Bug fix for collapse cohort
• dbplyr 2.5.0 fixes

CDMConnector 1.3.0

• Incorporate omopgenerics

CDMConnector 1.2.1

• Fix failing CRAN tests

CDMConnector 1.2.0

• Compatibility with dbplyr v2.4.0

CDMConnector 1.1.4

• Fix recursive edge cases with cdm reference issue.

CDMConnector 1.1.3

• Fix recursive cdm reference issue. Thanks @catalamarti!

CDMConnector 1.1.2

• fix failing test on CRAN

CDMConnector 1.1.1

• add some bigquery support

August 22, 2023

CDMConnector 1.1.0

• add copy_cdm_to, copyCdmTo
• add generate_concept_cohort_set, generateConceptCohortSet
• add more example CDM datasets
• add record_cohort_attrition, recordCohortAttrition
• improve database test coverage
• update vignettes

Released Aug 17, 2023

CDMConnector 1.0.0

• remove write_prefix in cdm_from_con in favor of using the write_schema argument for prefixing
• remove cdm_tables argument from cdm_from_con in favor of cdm_select_tbl selection function
• add attributes to the cdm object to communicate downstream temp table preferences

Released June 7, 2023

CDMConnector 0.6.0

• generate Capr cohorts with generateCohortSet
• add datepart function for extracting year, month, day parts of dates in dplyr
• fix datediff logic for years so it now returns number of complete years between two date
• add "write_prefix" attribute to cdm objects to support a namespace within the write_schema

Released May 5, 2023

CDMConnector 0.5.1

• Add both camelCase and snake_case versions of all functions (@Tsemharb)
• Add cdm object attributes to cdm_snapshot output
• use number_records and number_subjects in cohort counts table
• Minor bug fixes

Released on March 20, 2023

CDMConnector 0.5.0

• Define generatedCohortSet class
• Add summarize_quantile for cross database quantile queries
• Add GeneratedCohortSet object, constructor, and attribute accessor functions
• Add vignette on cohort generation
• Add cdmSubset, cdmSubsetCohort, cdmSample for subsetting a cdm
• Add cdmFlatten for transforming a cdm into a single flat table of observations
• Improve test coverage
• Make Java dependency optional
• cdm_schema is now required in cdm_from_con except for duckdb connections
• Remove visit_detail from default cdm tables
• Deprecate computePermanent
• Improve package website

Substantial contributions by @edward-burn, @catalamarti, @Tsemharb who are now package co-authors.

Released Mar 8, 2023

CDMConnector 0.4.1

• Add computeQuery function for creating temp and persistent tables from dplyr queries
• Download Eunomia from darwin-eu repository as zipped csv files
• Add passing tests for Oracle and Spark
• Add asDate wrapper that provides correct as.Date dbplyr translations
• Incorporate code review suggestions from @mvankessel-EMC

Released Jan 21, 2023

CDMConnector 0.3.0

• Add computePermanent and appendPermanent functions
• Add readCohortSet
• Add generateCohortSet
• Extract Eunomia dataset so that it is downloaded separately

Released Nov 29, 2022

CDMConnector 0.2.0

• Add support for OMOP v5.3 and v5.4
• Add datediff and dateadd functions that can be used in dplyr::mutate()
• Add assert_tables function for checking that a cdm object has required tables
• Add camelCase versions of several functions

Released Nov 15, 2022

CDMConnector 0.1.0

• Initial release Sept 11, 2022
• Added a NEWS.md file to track changes to the package.

CDMConnector documentation built on April 4, 2025, 4:42 a.m.