CDROM: Phylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data

Classification is based on the recently developed phylogenetic approach by Assis and Bachtrog (2013). The method classifies the evolutionary mechanisms retaining pairs of duplicate genes (conservation, neofunctionalization, subfunctionalization, or specialization) by comparing gene expression profiles of duplicate genes in one species to those of their single- copy ancestral genes in a sister species.

AuthorBrent Perry <brp5173@psu.edu>, Raquel Assis <rassis@psu.edu>
Date of publication2016-04-27 18:56:44
MaintainerRaquel Assis <rassis@psu.edu>
LicenseGPL-2
Version1.1

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Files

CDROM
CDROM/inst
CDROM/inst/extdata
CDROM/inst/extdata/chicken_expr.txt
CDROM/inst/extdata/human_chicken_singles.txt
CDROM/inst/extdata/human_chicken_dups.txt
CDROM/inst/extdata/human_expr.txt
CDROM/NAMESPACE
CDROM/R
CDROM/R/CDROM.R
CDROM/MD5
CDROM/DESCRIPTION
CDROM/man
CDROM/man/CDROM.Rd

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