cellTypeAssign: Assign cell types using correlation matrix computed using...
In CDSeq: A Complete Deconvolution Method using Sequencing Data

Assign cell types using correlation matrix computed using cell-type-specific GEPs and reference GEPs. cellTypeAssign assigns CDSeq-identified cell types to reference profile.

1	cellTypeAssign(corMat, threshold = 0.8)

`corMat`	correlation matrix between CDSeq-estimated GEPs and reference GEPs.
`threshold`	only the correlations that are above threshold will be considered.

cellTypeAssign returns a vector of cell type assignment to the reference profile.

CDSeq documentation built on Feb. 10, 2021, 5:07 p.m.