makeRhoNull: Generating the null distribution of the significance score of...
In CEDA: CRISPR Screen and Gene Expression Differential Analysis
makeRhoNull R Documentation
Generating the null distribution of the significance score
of a gene.
Description
Code was adapted from R package gscreend.
Usage
makeRhoNull(n, p, nperm)
Arguments
n
An integer representing sgRNA number of a gene.
p
A numeric vector which contains the percentiles of the
p-values that meet the cut-off (alpha).
nperm
Number of permutation runs.
Value
A numric vector which contains all the significance scores
(rho) of genes generated by a permutation test where the sgRNAs are
randomly assigned to genes.
CEDA documentation built on May 29, 2024, 7:44 a.m.
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| makeRhoNull | R Documentation |
Generating the null distribution of the significance score of a gene.
Description
Code was adapted from R package gscreend.
Usage
makeRhoNull(n, p, nperm)
Arguments
n |
An integer representing sgRNA number of a gene. |
p |
A numeric vector which contains the percentiles of the p-values that meet the cut-off (alpha). |
nperm |
Number of permutation runs. |
Value
A numric vector which contains all the significance scores (rho) of genes generated by a permutation test where the sgRNAs are randomly assigned to genes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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