CINmetrics: Calculate Chromosomal Instability Metrics

Implement various chromosomal instability metrics. 'CINmetrics' (Chromosomal INstability metrics) provides functions to calculate various chromosomal instability metrics on masked Copy Number Variation(CNV) data at individual sample level. The chromosomal instability metrics have been implemented as described in the following studies: Baumbusch LO et al. 2013 <doi:10.1371/journal.pone.0054356>, Davidson JM et al. 2014 <doi:10.1371/journal.pone.0079079>, Chin SF et al. 2007 <doi:10.1186/gb-2007-8-10-r215>.

Package details

AuthorVishal H. Oza, Roshan Darji, Brittany N. Lasseigne
MaintainerVishal H. Oza <>
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

Try the CINmetrics package in your browser

Any scripts or data that you put into this service are public.

CINmetrics documentation built on Aug. 2, 2021, 9:06 a.m.