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######################################################################
#Copyright Jason Rudy & Faramarz Valafar 2009-2010
#This program is free software: you can redistribute it and/or modify
#it under the terms of the GNU General Public License as published by
#the Free Software Foundation, either version 3 of the License, or
#(at your option) any later version.
#This program is distributed in the hope that it will be useful,
#but WITHOUT ANY WARRANTY; without even the implied warranty of
#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
#GNU General Public License for more details.
#You should have received a copy of the GNU General Public License
#along with this program. If not, see <http://www.gnu.org/licenses/>.
######################################################################
FB_smoother <-
function(x, s, mu, inds){
#This function has been generalized to allow for n>1
# phi <- numeric(length(unlist(inds)))
k <- length(x)
phi <- numeric(k)
for(i in 1:length(inds)){
phi[inds[[i]]] <- (1 + mu[i])*(x[inds[[i]]] + s[inds[[i]]]) - jordan_sqrt(jordan_square(x[inds[[i]]] + mu[i]*s[inds[[i]]]) + jordan_square(mu[i]*x[inds[[i]]] + s[inds[[i]]]) + 2*(mu[i]^2)*jordan_identity(length(inds[[i]])))
}
return(phi)
}
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