matrix_to_triplets: Conversion from matrix to coordinate/triplet format

In CMF: Collective Matrix Factorization

Conversion from matrix to coordinate/triplet format

Description

The CMF code requires inputs to be speficied in a specific sparse format. This function converts regular R matrices into that format.

Usage

matrix_to_triplets(orig)

Arguments

orig	A matrix of class matrix

Details

The element X[i, j] on the i-th row and j-th column is represented as a triple (i, j, X[i,k]). The input for CMF is then a matrix where each row specifies one element, and hence the representation is of size N x 3, where N is the total number of observed entries.

In the original input matrix the missing entries should be marked as NA. In the output they will be completely omitted.

Even though this format reminds the representation often used for representing sparse matrices, it is important to notice that observed zeroes are retained in the representation. The elements missing from this representation are considered unknown, not zero.

Value

The input matrix in triplet/coordinate format.

Author(s)

Arto Klami and Lauri Väre

See Also

triplets_to_matrix()

Examples

x <- matrix(c(1, 2, NA, NA, 5, 6), nrow = 3)
triplet <- matrix_to_triplets(x)
print(triplet)

CMF documentation built on Aug. 10, 2022, 1:06 a.m.