cnvData: Pseudo Copy Number Variants Data
In CONCUR: Copy Number Profile Curve-Based Association Test
cnvData R Documentation
Pseudo Copy Number Variants Data
Description
This data set includes simulated CNV data in PLINK CNV data format.
The data are also available from the authors through the url
provided below. These data were generated following the simulation
study used to illustrate the method in the original manuscript also
referenced below; it has been reduced to include only 600 individuals.
These data are not meaningful and are intended for demonstration purposes only.
Usage
data(cnvData)
Format
cnvData is a data.frame containing 522 observations with 5 columns:
- ID
character patient identifier.
- CHR
CNV chromosome.
- BP1
starting location in base pairs.
- BP2
ending location in base pairs.
- TYPE
copy number (0,1,3,or 4).
References
Brucker, A., Lu, W., Marceau West, R., Yu, Q-Y., Hsiao, C. K.,
Hsiao, T-H., Lin, C-H., Magnusson, P. K. E., Holloway, S. T.,
Sullivan, P. F., Szatkiewicz, J. P., Lu, T-P., and
Tzeng, J-Y. Association testing using Copy Number Profile Curves (CONCUR)
enhances power in copy number variant analysis. <doi:10.1101/666875>.
CONCUR documentation built on June 7, 2022, 5:07 p.m.
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| cnvData | R Documentation |
Pseudo Copy Number Variants Data
Description
This data set includes simulated CNV data in PLINK CNV data format. The data are also available from the authors through the url provided below. These data were generated following the simulation study used to illustrate the method in the original manuscript also referenced below; it has been reduced to include only 600 individuals. These data are not meaningful and are intended for demonstration purposes only.
Usage
data(cnvData)
Format
cnvData is a data.frame containing 522 observations with 5 columns:
- ID
character patient identifier.
- CHR
CNV chromosome.
- BP1
starting location in base pairs.
- BP2
ending location in base pairs.
- TYPE
copy number (0,1,3,or 4).
References
Brucker, A., Lu, W., Marceau West, R., Yu, Q-Y., Hsiao, C. K., Hsiao, T-H., Lin, C-H., Magnusson, P. K. E., Holloway, S. T., Sullivan, P. F., Szatkiewicz, J. P., Lu, T-P., and Tzeng, J-Y. Association testing using Copy Number Profile Curves (CONCUR) enhances power in copy number variant analysis. <doi:10.1101/666875>.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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