CORE: Cores of Recurrent Events

Share:

given a collection of intervals with integer start and end positions, find recurrently targeted regions and estimate the significance of finding. Randomization is implemented by parallel methods, either using local host machines, or submitting grid engine jobs.

Author
Alex Krasnitz, Guoli Sun
Date of publication
2014-12-30 00:12:08
Maintainer
Guoli Sun <guolisun87@gmail.com>
License
GPL-2
Version
3.0

View on CRAN

Man pages

CORE
Cores of Recurrent Events
testInputBoundaries
A table of chromosome boundary positions for DNA copy number...
testInputCORE
A table of DNA copy number gain events observed in 100...

Files in this package

CORE
CORE/NAMESPACE
CORE/data
CORE/data/testInputCORE.rda
CORE/data/testInputBoundaries.rda
CORE/R
CORE/R/randomRescaledEventMoves.R
CORE/R/JCOREiteration.R
CORE/R/fill.values.R
CORE/R/overlap.indicator.R
CORE/R/PCORErandomized.R
CORE/R/ICORErandomized.R
CORE/R/PCOREiteration.R
CORE/R/envelope.indicator.R
CORE/R/makepairs.R
CORE/R/ICOREiteration.R
CORE/R/containment.indicator.R
CORE/R/advanceRNG.R
CORE/R/WrRGrid.R
CORE/R/JCORErandomized.R
CORE/R/Rparallel.R
CORE/R/randomEventMoves.R
CORE/R/interval.schedule.R
CORE/R/CORE.R
CORE/MD5
CORE/DESCRIPTION
CORE/man
CORE/man/testInputBoundaries.Rd
CORE/man/CORE.Rd
CORE/man/testInputCORE.Rd
CORE/INDEX