CORE: Cores of Recurrent Events
Version 3.0

given a collection of intervals with integer start and end positions, find recurrently targeted regions and estimate the significance of finding. Randomization is implemented by parallel methods, either using local host machines, or submitting grid engine jobs.

AuthorAlex Krasnitz, Guoli Sun
Date of publication2014-12-30 00:12:08
MaintainerGuoli Sun <guolisun87@gmail.com>
LicenseGPL-2
Version3.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("CORE")

Popular man pages

CORE: Cores of Recurrent Events
testInputBoundaries: A table of chromosome boundary positions for DNA copy number...
testInputCORE: A table of DNA copy number gain events observed in 100...
See all...

All man pages Function index File listing

Man pages

CORE: Cores of Recurrent Events
testInputBoundaries: A table of chromosome boundary positions for DNA copy number...
testInputCORE: A table of DNA copy number gain events observed in 100...

Functions

CORE Man page Source code
ICOREiteration Source code
ICORErandomized Source code
JCOREiteration Source code
JCORErandomized Source code
PCOREiteration Source code
PCORErandomized Source code
Rparallel Source code
WrRGrid Source code
advanceRNG Source code
containment.indicator Source code
envelope.indicator Source code
fill.values Source code
interval.schedule Source code
makepairs Source code
overlap.indicator Source code
randomEventMoves Source code
randomRescaledEventMoves Source code
testInputBoundaries Man page
testInputCORE Man page

Files

NAMESPACE
data
data/testInputCORE.rda
data/testInputBoundaries.rda
R
R/randomRescaledEventMoves.R
R/JCOREiteration.R
R/fill.values.R
R/overlap.indicator.R
R/PCORErandomized.R
R/ICORErandomized.R
R/PCOREiteration.R
R/envelope.indicator.R
R/makepairs.R
R/ICOREiteration.R
R/containment.indicator.R
R/advanceRNG.R
R/WrRGrid.R
R/JCORErandomized.R
R/Rparallel.R
R/randomEventMoves.R
R/interval.schedule.R
R/CORE.R
MD5
DESCRIPTION
man
man/testInputBoundaries.Rd
man/CORE.Rd
man/testInputCORE.Rd
INDEX
CORE documentation built on May 19, 2017, 6:45 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.