read.RevBayes: read RevBayes log file

In CRABS: Congruent Rate Analyses in Birth-Death Scenarios

read RevBayes log file

Description

read RevBayes log file

Usage

read.RevBayes(x, n_times, max_t = 100, n_samples = 20, summary_type = "none", 
extinction_prefix = "extinction_rate.", speciation_prefix = "speciation_rate.")

Arguments

x	path to log, or data frame
n_times	number of time knots
max_t	tree height
n_samples	first n posterior samples
summary_type	either "none" for all the posterior samples, or "mean" or "median" for the posterior mean/median
extinction_prefix	the prefix string for the extinction rate column names. Must be unique
speciation_prefix	the prefix string for the speciation rate column names. Must be unique

Value

a set of CRABS models, each being a sample in the posterior

Examples

data(primates_ebd_log)
posterior <- read.RevBayes(primates_ebd_log, n_times = 500, max_t = 65, n_samples = 20)

CRABS documentation built on Oct. 24, 2023, 5:06 p.m.