CellDEEP: Cell DiffErential Expression by Pooling ('CellDEEP')

Pool cells together before running differentially expression (DE) analysis. Tell 'CellDEEP' how many cells you want to pool together (which shall be determined by the overall cell number of data), then run DE analysis. Cheng et al. (2026) <doi:10.64898/2026.03.09.710522>.

Package details

AuthorYiyi Cheng [aut, cre] (ORCID: <https://orcid.org/0009-0005-3329-6842>)
MaintainerYiyi Cheng <2593244c@student.gla.ac.uk>
LicenseGPL (>= 3)
Version1.0.1
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("CellDEEP")

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CellDEEP documentation built on March 29, 2026, 5:08 p.m.