prepare_data: Standardize Seurat Metadata for CellDEEP

In CellDEEP: Cell DiffErential Expression by Pooling ('CellDEEP')

Standardize Seurat Metadata for CellDEEP

Description

Standardizes metadata columns to sample_id, group_id, and cluster_id so CellDEEP functions can run consistently.

Usage

prepare_data(
  Subset.Seurat,
  assay = "RNA",
  sample_id,
  group_id,
  cluster_id,
  file_path = NULL
)

Arguments

Subset.Seurat	A Seurat object.
assay	Character. Assay to use (default "RNA").
sample_id	Character. Metadata column name for sample IDs.
group_id	Character. Metadata column name for group IDs.
cluster_id	Character. Metadata column name for cluster IDs.
file_path	Character. Reserved for compatibility.

Value

A Seurat object with standardized metadata fields.

CellDEEP documentation built on March 29, 2026, 5:08 p.m.