resultsUI: Generate and Report Model Diagnostics from NLME or NONMEM...

In Certara.ModelResults: Generate Diagnostics for Pharmacometric Models Using 'shiny'

Generate and Report Model Diagnostics from NLME or NONMEM runs

Description

Shiny application to generate, customize, and report diagnostic plots and tables from NLME or NONMEM output files. Create an Rmarkdown file of tagged model diagnostics and render into submission ready report.

Usage

resultsUI(model, xpdb = NULL, tagged = NULL, settings = NULL, ...)

Arguments

model	A single object, vector, or list of objects of class NlmePmlModel.
xpdb	A single object or list of objects of class xpose_data.
tagged	List of tagged objects returned from previous tagged <- resultsUI() session.
settings	List of settings (e.g., settings.Rds) returned from previous Shiny session.
...	Additional arguments for Pirana integration.

Value

If interactive(), returns a list of tagged diagnostics from the Shiny application, otherwise returns TRUE.

Examples

if (interactive()) {


# RsNLME
library(Certara.RsNLME)
library(Certara.ModelResults)

model1 <- pkmodel(numCompartments = 1,
                 data = pkData,
                 ID = "Subject",
                 Time = "Act_Time",
                 A1 = "Amount",
                 CObs = "Conc",
                 modelName = "OneCpt_IVBolus_FOCE-ELS")

baseFitJob1 <- fitmodel(model1)


model2 <- pkmodel(numCompartments = 2,
                 data = pkData,
                 ID = "Subject",
                 Time = "Act_Time",
                 A1 = "Amount",
                 CObs = "Conc",
                 modelName = "TwCpt_IVBolus_FOCE-ELS")

baseFitJob2 <- fitmodel(model2)

# Run Model Results
resultsUI(model = c(model1, model2))


# NONMEM via xpose

library(Certara.ModelResults)
library(xpose)

xpdb <- xpose_data(
  runno = "1",
  prefix = "run",
  ext = ".lst",
  dir = "./NONMEM/Hands_onB/")

resultsUI(xpdb = xpdb)

# Multiple models

xpdb_multiple <- list(
 run1 = xpose_data(file = "run1.lst"),
 run2 = xpose_data(file = "run2.lst"),
 run3 = xpose_data(file = "run3.lst"),
 run4 = xpose_data(file = "run4.lst")
)
}

Certara.ModelResults documentation built on April 4, 2025, 2:43 a.m.