ChIPtest: Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-Seq Data

Nonparametric Tests to identify the differential enrichment region for two conditions or time-course ChIP-seq data. It includes: data preprocessing function, estimation of a small constant used in hypothesis testing, a kernel-based two sample nonparametric test, two assumption-free two sample nonparametric test.

AuthorVicky Qian Wu ; Kyoung-Jae Won ; Hongzhe Li <hongzhe@upenn.edu>
Date of publication2016-07-20 17:59:16
MaintainerVicky Qian Wu <wuqian7@gmail.com>
LicenseGPL (>= 2.15.1)
Version1.0

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Files

ChIPtest
ChIPtest/src
ChIPtest/src/ChIPtest_main.cc
ChIPtest/src/ChIPtest.cc
ChIPtest/src/ChIPtest.h
ChIPtest/NAMESPACE
ChIPtest/data
ChIPtest/data/data1.rda
ChIPtest/data/data4.rda
ChIPtest/R
ChIPtest/R/NormTransformation.R ChIPtest/R/TS_kernel.R ChIPtest/R/TS_twosample.R ChIPtest/R/est.c.R
ChIPtest/MD5
ChIPtest/DESCRIPTION
ChIPtest/man
ChIPtest/man/NormTransformation.Rd ChIPtest/man/data4.Rd ChIPtest/man/ChIPtest-package.Rd ChIPtest/man/est.c.Rd ChIPtest/man/TS_twosample.Rd ChIPtest/man/TS_kernel.Rd ChIPtest/man/data1.Rd

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