Man pages for ChemoSpecUtils
Functions Supporting Packages ChemoSpec and ChemoSpec2D
| check4Gaps | Check for Discontinuities (Gaps) in a Vector & Optionally... |
| checkForPackageWithVersion | Check for an Installed Package with a Particular Version or... |
| ChemoSpecUtils-package | Functions Supporting Packages ChemoSpec and ChemoSpec2D |
| chkGraphicsOpt | Check the Graphic Output Option/Mode |
| chkSpectra | Verify the Integrity of a Spectra or Spectra2D Object |
| colorSymbol | Color in ChemoSpec and ChemoSpec2D |
| conColScheme | Change the Color Scheme of a Spectra or Spectra2D Object |
| dot-addEllipseInfo | Add Info About Ellipses to Plot |
| dot-addLegend | Add a Legend to a Plot |
| dot-addMethod | Add Info About Data Reduction Method to Plot |
| dot-chkArgs | Check spectra and pca Arguments of Functions That Require... |
| dot-chkReqGraphicsPkgs | Verify Required Graphics Packages are Available. |
| dot-colLeaf | Color the Leaves of a Dendrogram Based on a Spectra Object |
| dot-computeEllipses | Compute Confidence Ellipses |
| dot-distPlot | Draw a Distance Plot |
| dot-drawEllipses | Add Ellipses to Plot |
| dot-drawPoints | Add Points to a Score Plot |
| dot-extraData | Check for Extra Data Appended to a Spectra or Spectra2D... |
| dot-findNA | Find NA in a Spectra2D Object |
| dot-getExtremeCoords | getExtremeCoords |
| dot-getLimits | Process Limits for a Spectra2D Plot |
| dot-getVarExplained | Compute the Variance Explained from PCA or Other Reduction... |
| dot-ggAddLegend | Add Legend to a ggplot2 Plot |
| dot-ggAnnotate | Annotate a ggplot2 Plot with Text |
| dot-ggRepel | Wrapper for geom_text_repel |
| dot-groupNcolor | Assign Group Membership and Colors for a Spectra or Spectra2D... |
| dot-labelExtremes | Label Extreme Values |
| dot-plotHCA | Plot Dendrogram for Spectra or Spectra2D Object |
| dot-prepLegendCoords | Sanitize Legend Coordinates |
| dot-remGrpSam | Remove Groups or Samples from a Spectra or Spectra2D Object |
| dot-scorePlot | scorePlot |
| dot-shrinkLeaf | Shrink the Leaves of a Dendrogram Based on a Spectra Object |
| GraphicsOptions | Graphic Output Options in ChemoSpec and ChemoSpec2D |
| hcaScores | HCA on PCA/MIA/PARAFAC scores from a Spectra or Spectra2D... |
| plotScores | Plot Scores from PCA, MIA or PARAFAC Analysis of a Spectra or... |
| plotScree | Scree Plots from PCA or MIA Analysis of a Spectra or... |
| removeFreq | Remove Frequencies from a Spectra or Spectra2D Object |
| removeGroup | Remove a Group from a Spectra or Spectra2D Object |
| removeSample | Remove Samples from a Spectra or Spectra2D Object |
| rowDist | Compute Distance Between Rows of a Matrix |
| sampleDist | Compute the Distances Between Samples in a Spectra or... |
| sumGroups | Summarize the Group Membership of a Spectra or Spectra2D... |
| sumSpectra | Summarize a Spectra or Spectra2D Object |
| updateGroups | Update Group Names in a Spectra or Spectra2D Object |
