# CluMix: Clustering and Visualization of Mixed-Type Data

Provides utilities for clustering subjects and variables of mixed data types. Similarities between subjects are measured by Gower's general similarity coefficient with an extension of Podani for ordinal variables. Similarities between variables are assessed by combination of appropriate measures of association for different pairs of data types. Alternatively, variables can also be clustered by the 'ClustOfVar' approach. The main feature of the package is the generation of a mixed-data heatmap. For visualizing similarities between either subjects or variables, a heatmap of the corresponding distance matrix can be drawn. Associations between variables can be explored by a 'confounderPlot', which allows visual detection of possible confounding, collinear, or surrogate factors for some variables of primary interest. Distance matrices and dendrograms for subjects and variables can be derived and used for further visualizations and applications.

- Author
- M. Hummel, A. Kopp-Schneider
- Date of publication
- 2016-06-03 18:47:22
- Maintainer
- Manuela Hummel <m.hummel@dkfz.de>
- License
- GPL (>= 2)
- Version
- 1.1

## Man pages

- association
- Function to calculate a measure for association between two...
- CluMix-package
- \Sexpr[results=rd,stage=build]{tools:::Rd_package_title("CluMix")}
- confounderPlot
- Confounder Plot
- dendro.subjects
- Subjects dendrogram
- dendro.variables
- Variables dendrogram
- distmap
- Display similarity matrix
- dist.subjects
- Distance matrix for subjects
- dist.variables
- Distance matrix for variables
- mixdata
- Small example dataset with variables of different types
- mix.heatmap
- Heatmap for data with variables of mixed types
- similarity.subjects
- Similarity matrix for subjects
- similarity.variables
- Similarity matrix for variables

## Files in this package

CluMix |

CluMix/inst |

CluMix/inst/doc |

CluMix/inst/doc/CluMix.pdf |

CluMix/inst/doc/CluMix.R |

CluMix/inst/doc/CluMix.Rnw |

CluMix/NAMESPACE |

CluMix/NEWS |

CluMix/data |

CluMix/data/mixdata.rda |

CluMix/R |

CluMix/R/similarity.variables.R |

CluMix/R/confounderPlot.R |

CluMix/R/dendro.variables.R |

CluMix/R/association.R |

CluMix/R/distmap.R |

CluMix/R/visualization.R |

CluMix/R/dendro.subjects.R |

CluMix/R/similarities.R |

CluMix/R/mix.heatmap.R |

CluMix/R/dist.subjects.R |

CluMix/R/similarity.subjects.R |

CluMix/R/zzz.R |

CluMix/R/dist.variables.R |

CluMix/vignettes |

CluMix/vignettes/references.bib |

CluMix/vignettes/CluMix.Rnw |

CluMix/MD5 |

CluMix/build |

CluMix/build/vignette.rds |

CluMix/build/partial.rdb |

CluMix/DESCRIPTION |

CluMix/man |

CluMix/man/similarity.variables.Rd |

CluMix/man/association.Rd |

CluMix/man/dendro.variables.Rd |

CluMix/man/mix.heatmap.Rd |

CluMix/man/similarity.subjects.Rd |

CluMix/man/dist.subjects.Rd |

CluMix/man/dendro.subjects.Rd |

CluMix/man/confounderPlot.Rd |

CluMix/man/dist.variables.Rd |

CluMix/man/mixdata.Rd |

CluMix/man/CluMix-package.Rd |

CluMix/man/distmap.Rd |