ClueR: CLUster Evaluation (CLUE)

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CLUE is an R package for identifying optimal number of clusters in a given time-course dataset clustered by cmeans or kmeans algorithms.

Author
Pengyi Yang & Raja Jothi
Date of publication
2015-10-28 01:02:01
Maintainer
Pengyi Yang <yangpy7@gmail.com>
License
GPL-3
Version
1.1

View on CRAN

Man pages

ClueR-package
CLUster Evaluation R package
clustEnrichment
Cluster enrichment test
clustOptimal
Generate optimal clustering
enrichmentTest
Fisher's exact test-based enrichment test
fuzzPlot
Visualize fuzzy clustering results
hES
Human embryonic stem cell phosphoproteomics data
Pathways.KEGG
KEGG pathway annotations
Pathways.reactome
Reactome pathway annotations
PhosphoSite.human
PhosphoSitePlus annotations for human
PhosphoSite.mouse
PhosphoSitePlus annotations for mouse
runClue
Run CLUster Evaluation
temporalSimu
Temporal data simulation

Files in this package

ClueR
ClueR/NAMESPACE
ClueR/data
ClueR/data/Pathways.rda
ClueR/data/hES.rda
ClueR/data/PhosphoSite.rda
ClueR/R
ClueR/R/temporalSimu.R
ClueR/R/runClue.R
ClueR/R/enrichmentTest.R
ClueR/R/clustEnrichment.R
ClueR/R/fuzzPlot.R
ClueR/R/clustOptimal.R
ClueR/README.md
ClueR/MD5
ClueR/DESCRIPTION
ClueR/man
ClueR/man/hES.Rd
ClueR/man/Pathways.KEGG.Rd
ClueR/man/enrichmentTest.Rd
ClueR/man/clustOptimal.Rd
ClueR/man/runClue.Rd
ClueR/man/Pathways.reactome.Rd
ClueR/man/PhosphoSite.human.Rd
ClueR/man/PhosphoSite.mouse.Rd
ClueR/man/clustEnrichment.Rd
ClueR/man/fuzzPlot.Rd
ClueR/man/temporalSimu.Rd
ClueR/man/ClueR-package.Rd